Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5 136 3e-27 seq4 87.8 1e-12 seq9 86.0 5e-12 >seq5 Length=12895223 Score = 136 bits (150), Expect = 3e-27 Identities = 208/294 (71%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 37815 GAAAACGCCGACACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAG 37874 |||| ||| |||| |||||| | ||||||||||||| || | ||||| ||| ||| Sbjct 6100709 GAAACTGCCCACACCCACGATGACCTGTGGAACGCGGCCCAGCTGCAGCTGGTGAAGGAG 6100768 Query 37875 GGTAAGATGCATCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGAT 37934 | |||||||| || | |||||||||||||| |||||||| | || ||| | || Sbjct 6100769 GCCAAGATGCACGGGTTTCTGCGCATGTATTGGGCGAAGAAAATACTAGAGTGGAC-GAA 6100827 Query 37935 GATGCTC-AGACCGCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGG 37993 | || | || |||||| | ||||| |||||||| ||| |||||| |||| || Sbjct 6100828 AACGCCCGAGGAAGCGCTCGAAACGGCCATCTATCTCAACGATCGCTACAGCCTGGATGG 6100887 Query 37994 GCGTGATCCCAACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGC 38053 ||| ||||| || || |||||||| || ||||||| || ||| | || ||| | Sbjct 6100888 GCGCGATCCGAATGGATACGTCGGGTGCATGTGGTCGATCGCCGGCATCCATGATCAGGG 6100947 Query 38054 CTGGCGCGAGATTCCCATTTACGGCAAGATTCGGTACATGAACTACAACGGATG 38107 ||| ||| |||| ||||| ||||| |||||||||||| |||| || Sbjct 6100948 ATGGAAGGAGCGGGAAATTTTTGGCAAAATTCGCTACATGAACTACGACGGCTG 6101001 >seq4 Length=15719670 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||||||||| || ||||||||| || |||||||| | Sbjct 4750555 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGA 4750614 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| ||||||||||| || || || |||||||||||| ||| Sbjct 4750615 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGG 4750674 Query 34020 CACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 4750675 GATACCCTCCTTGTCC 4750690 >seq9 Length=6651167 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| ||| || || |||| || | || ||||||||| |||||||| || | | Sbjct 534984 CCTCCTCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 535043 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| |||| ||||||||||| || ||||| ||||||||||| ||| Sbjct 535044 AGAGTG-CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 535102 Query 34020 CACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 535103 GATTCCCTCTTTGTCC 535118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397060899848620