Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 140 8e-28 seq9 138 3e-27 seq4 131 4e-25 seq2 123 6e-23 >seq1 Length=30017264 Score = 140 bits (154), Expect = 8e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| | || || || || ||||| | || ||||| |||||| Sbjct 15159586 TCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAG 15159645 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| ||||| ||||| |||||||| || || || |||||||| Sbjct 15159646 ATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTC 15159705 Query 288403 TCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || |||| || || || |||||||| ||||| ||||||||||||||| Sbjct 15159706 TCGATGGTGTC---CGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTG 15159762 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 15159763 ACGAAGATTTGCAT 15159776 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || |||||||| ||||| | || | || || ||||| | | ||||| ||||| Sbjct 15157074 TTCCTTCTGGATATTGTAGTCTGATAGGGCACGGCCATCTTCCAGATACTTTCCGGCGAA 15157133 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 | ||| ||| ||| | || | ||||| ||| |||| || || || |||||| | Sbjct 15157134 GTAAAGATACTGCTGATACGAAGGCGTGCCTTCCTTAACCTGAATCTTAGCCTTCACGAT 15157193 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || | ||| ||||| |||||||| ||||| ||||||||||| ||||| Sbjct 15157194 CTCGATGGTGTCCGATGGTTCAACTTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTGAC 15157253 Query 288462 GAATATCTGCA 288472 ||| || |||| Sbjct 15157254 GAAGATTTGCA 15157264 >seq9 Length=6651167 Score = 138 bits (152), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | ||| || | || | || || || ||||| || ||||||| Sbjct 534580 TCCACCGCGAAGCCGAAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 534639 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 || ||||||||||| || | || || || ||||||||||||||||| || |||| Sbjct 534640 CAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGG 534696 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||| || || |||||||| || || || ||||| || || | ||| || || Sbjct 534697 CGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTC 534756 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 534757 GACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAAATCTGCAT 534807 Score = 138 bits (152), Expect = 3e-27 Identities = 151/198 (76%), Gaps = 12/198 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||||||||| || | || || || |||||| Sbjct 535020 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 535079 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||| |||||||| ||||| |||||||| || || || ||| Sbjct 535080 ATCAGACGCTGCTG---ATCTGGCGGGATTCCCTCTTTGTCCTGGATCTTGGCCTTGACG 535136 Query 288400 TTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| |||| || || || || ||||| ||||| || ||||| ||| Sbjct 535137 TTCTCGATCGTATC---CGATGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTC 535193 Query 288457 TTGACGAATATCTGCATT 288474 || ||||| ||||||||| Sbjct 535194 TTCACGAAGATCTGCATT 535211 >seq4 Length=15719670 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || || || |||| ||| ||| || ||||| || ||||| | Sbjct 15451525 CCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAC 15451466 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||||||||| ||| ||| Sbjct 15451465 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGG 15451406 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || |||||||| || || ||||| ||||| || | || | || || Sbjct 15451405 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACC 15451346 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || ||||| || || || ||||| |||||||| Sbjct 15451345 TCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 15451299 >seq2 Length=22738934 Score = 123 bits (136), Expect = 6e-23 Identities = 258/382 (68%), Gaps = 2/382 (1%) Strand=Plus/Minus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 ||||||||| |||| || | ||||| || ||| |||| || |||| ||||| || Sbjct 20260899 CCAAGCGTCCACGTCCGAACTCTATGGCAAGGTGGTCGAAACGCCGCAGAACGAAAAAAC 20260840 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACG-GTGTTGCAAAGTTGTACGCTTATTGGATCTGTA 72534 ||| || ||||| ||| || |||| |||| || || |||||| || ||||| | Sbjct 20260839 TCCATTCTATCCGCGATCGCCGTACGCGTGT-GCGAAAATGTACGGCTACTGGATAGTGA 20260781 Query 72535 AAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGA 72594 ||||| || ||| |||| ||||||| || |||||| ||| || || |||||| Sbjct 20260780 TCAATTATCGCGAGGCGTACAACATGTTTGCTTGCAACGGTATTCTCTTTAACCACGAGT 20260721 Query 72595 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT 72654 ||| |||| | | || ||||| ||||||||||| ||| ||||| |||| Sbjct 20260720 CGCCCCGGCGAGGTGAGAACTTTGTGACGCGTAAAATCACTCGCTCGGTGGCGAAGATTT 20260661 Query 72655 TCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGAT 72714 || | | ||| | | ||||||||| | ||| | || | || ||||| Sbjct 20260660 CGCTCGGCCAGCAGGAGTGCGTCGAGCTCGGTAATCTCGATTCGAAGCGTGACTGGGGCC 20260601 Query 72715 ATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACT 72774 | || || || ||||| |||||||||||||||||| |||| || | ||||| || | Sbjct 20260600 ACGCAAAAGACTACGTCGAAGCAATGTGGTTGATGATGCAGCAGAAGCAGCCGGAAGATT 20260541 Query 72775 ATGTGATTGCAACAGGGAAAAC 72796 || ||||| || || |||| Sbjct 20260540 TCGTCATTGCGACGGGCGAAAC 20260519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649714560180