Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq19 98.7 1e-15 seq2 86.0 7e-12 >seq19 Length=1744624 Score = 98.7 bits (108), Expect = 1e-15 Identities = 199/291 (68%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 171881 GTGAAGATGTACCTCGTTTGAGACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAATTG 171939 |||||||||||||||| | ||| ||| || || ||| | | ||||| ||||| || Sbjct 912342 GTGAAGATGTACCTCGGGCTGG-CGCTATCCTTACCGCCCGTCAACCGCGTACCAAACTG 912284 Query 171940 ACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGAC 171999 ||| | ||| | || || ||||| ||||| || | ||||| | |||| |||| Sbjct 912283 ACCGCCCGGGTACAGCAGGTTGATGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGAT 912224 Query 172000 AATCGTATCCGCGAGGGAGACT--TCACCGTGATGGTAGGCCGACTTGTCCGCGACATAC 172057 ||||| | || | |||| || ||||||||||| || ||| | ||||| || | Sbjct 912223 GATCGT--CGAACAGAGCGACTGCTCGCCGTGATGGTACGCGGACATTTCCGCCACCGAA 912166 Query 172058 GCCGCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATG 172117 | |||||||| |||||||||| ||| |||| ||| | |||||||| | ||| Sbjct 912165 CCTGCCAACTGGGCCACCTTCACCTCGCGCTTGTCGTTACGCTTGAAGCACGTAAACAGC 912106 Query 172118 ACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 172168 ||||| | ||| ||||| | ||||| |||| || ||| || ||| Sbjct 912105 ACCTTCCGCTGGCCCGGCTTCAACCCGTCCAGCATGCACGGGATCGAGCGC 912055 >seq2 Length=22738934 Score = 86.0 bits (94), Expect = 7e-12 Identities = 182/264 (69%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 8673 TTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTG 8732 ||||| ||| |||||||||||| ||||||||||| ||||| || || | | || ||| Sbjct 20260754 TTTGCTTGCAACGGTATTCTCTTTAACCACGAGTCGCCCCGGCGAGGTGAGAACTTTGTG 20260695 Query 8733 ACAAAGAAGATCAC-CGAT-GGTATCAAACAAATCGTCGCGGGTGAGAGGGAGTTCATTG 8790 || || ||||| || | ||| | || | ||| | | || || ||||| | | | Sbjct 20260694 ACGCGTAAAATCACTCGCTCGGTGGCGAAGATTTCG-CTC-GGCCAGCAGGAGTGCGTCG 20260637 Query 8791 AATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCA 8850 | | || || ||| | | || | |||||||| ||||| || ||||| || ||||| | Sbjct 20260636 AGCTCGGTAATCTCGATTCGAAGCGTGACTGGGGCCACGCAAAAGACTACGTCGAAGCAA 20260577 Query 8851 TGTGGCTCGTACTTCAACAAGAAG-AGGCGGACGAATATGTCGTCGCGACGGGGGAGACA 8909 ||||| | | | || | ||||| || |||| || | ||| | |||||||| || || Sbjct 20260576 TGTGGTTGATGATGCAGC-AGAAGCAGCCGGAAGATTTCGTCATTGCGACGGGCGAAACG 20260518 Query 8910 CACTCCGTCAGGGAGTTCGTTGAG 8933 || || || | || || || ||| Sbjct 20260517 CATTCGGTGCGAGAATTTGTCGAG 20260494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351285254800