Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 4e-15 seq9 91.5 2e-13 seq4 91.5 2e-13 seq3 91.5 2e-13 seq2 91.5 2e-13 seq11 89.7 6e-13 seq18 87.8 2e-12 seq8 87.8 2e-12 seq7 87.8 2e-12 >seq1 Length=30017264 Score = 96.9 bits (106), Expect = 4e-15 Identities = 175/251 (70%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | ||||| || | ||| |||||| || |||||||| || | | Sbjct 15159550 CCTCCACGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAC 15159609 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| || ||||| || || |||||||| || | || Sbjct 15159610 AGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGG 15159669 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGAT---TC 42157 | || ||||| ||| ||| | || | | ||| | | | ||||| |||| || Sbjct 15159670 ATGCCTTCCTTATCC-TGAATCTTAGCCTTCACGTTCTCGATGGTGTC---CGATGGCTC 15159725 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCACGCC 42217 ||| || | ||||||||| || || || || ||||| || ||||||||||| || | || Sbjct 15159726 CACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCATGTTGAAGCT 15159785 Query 42218 G--AATACAAT 42226 | |||| ||| Sbjct 15159786 GTAAATATAAT 15159796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| |||||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 13755151 AAAAATTCTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 13755210 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 13755211 CTGACCACTATACTATCGAGGA 13755232 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||| |||||| ||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 13755455 AAAGATTTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 13755396 Query 57057 CTCACCACTATACTACCGAGGAT 57079 || |||||||||||| ||||||| Sbjct 13755395 CTGACCACTATACTATCGAGGAT 13755373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3077330 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 3077271 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 3077270 ATACTATCGAGGA 3077258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 13754659 AAAAATCACCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 13754718 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 13754719 TGACCACTATACTATCGAGGA 13754739 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 12998845 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 12998786 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 12998785 TACTATCGAGGA 12998774 >seq9 Length=6651167 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 6498533 TTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 6498474 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 6498473 CTATACTATCGAGGA 6498459 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/84 (83%), Gaps = 4/84 (5%) Strand=Plus/Plus Query 56999 AAAATTT----TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||||||| ||||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 3129786 AAAATTTCACCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 3129845 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||| |||||| Sbjct 3129846 TACTGACCACTATACTATCGAGGA 3129869 >seq4 Length=15719670 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||| | || |||||| || ||||||||||| | ||| || || | || || Sbjct 4750573 CACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCCTC 4750632 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| |||||||| || | || | | |||||||||| Sbjct 4750633 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTG 4750692 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| ||| || | || | | ||| || | || || || | || ||||| || Sbjct 4750693 GATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 4750752 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||| || || || || ||||| ||||| || Sbjct 4750753 ACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 4750785 >seq3 Length=16089237 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||| |||||| ||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 11878372 AAAGATTTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 11878313 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 11878312 CTGACCACTATACTATCGAGGA 11878291 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 12029157 TTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 12029216 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 12029217 CTATACTATCGAGGA 12029231 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 |||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| || Sbjct 4511470 ATTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 4511529 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 4511530 CACTATACTATCGAGGA 4511546 >seq2 Length=22738934 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 10149772 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 10149713 Query 57065 TATACTACCGAGGAT 57079 ||||||| ||||||| Sbjct 10149712 TATACTATCGAGGAT 10149698 >seq11 Length=6025392 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 4876948 TTCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 4876889 Query 57063 ACTATACTACCGAGGA--TTGAATAT 57086 ||||||||| |||||| ||| |||| Sbjct 4876888 ACTATACTATCGAGGACCTTGGATAT 4876863 >seq18 Length=1856345 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1247935 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1247876 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1247875 ATACTATCGAGGA 1247863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1248809 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 1248750 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1248749 ATACTATCGAGGA 1248737 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1249746 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 1249687 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1249686 ATACTATCGAGGA 1249674 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1250223 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1250164 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1250163 ATACTATCGAGGA 1250151 >seq8 Length=6913162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 6317652 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 6317593 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 6317592 ATACTATCGAGGA 6317580 >seq7 Length=7675037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 336800 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 336741 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 336740 TACTATCGAGGAT 336728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543210695050400