Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 9e-15 seq7 89.7 4e-13 >seq1 Length=30017264 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 || ||||||||||| |||||||| | ||| ||| ||||||| ||| || || ||||| Sbjct 24411553 GCTGGGTTCGGTGTTACGGCCGGTGCCCACCGGCTGTGGACACACCGGGCGTATAAGGCG 24411494 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| || || | |||| | |||| || || | || ||||||| | | Sbjct 24411493 AAGCTGCCGCTCCGGATCATCCTCATGTGCTGCTACTGTCTGTCCGGCCAGAACAGCCTG 24411434 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCA 108519 | ||||||| ||||||| | | || ||||||||||| || ||| || || || Sbjct 24411433 TTCGATTGGGTGCGCGATCACCGCATCCATCACAAGTACTCGGAGACGGACGCGGATCCG 24411374 Query 108520 CACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGAT 108569 |||||| | ||| | || |||| | | ||||||| || ||||| |||| Sbjct 24411373 CACAACTCGAACCGTGGCTTCTTCTACGCGCACGTCGGCTGGCTGCTGAT 24411324 Score = 93.3 bits (102), Expect = 3e-14 Identities = 217/322 (67%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 ||||||||||| ||||| | || || || ||| ||||| ||| | ||||| || Sbjct 24417114 GCCGGGTTCGGCGTGACCGGTGGGGTGCACCGGCTGTGGTGCCATCGGTCGTACAAAGCG 24417055 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| || | | |||| | |||| |||| | || || |||||||| ||| Sbjct 24417054 AAACTACCGCTCCGCATCATCCTTATGTGCTGCTACTCGATAGCCGGCCAGAACACGATC 24416995 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG-ACGGCCGACCC 108518 | ||||| | || || | |||||||||||||||| || ||| |||| || || Sbjct 24416994 TACGACTGGGTCCGGGACCATCGCATTCACCACAAGTACTCGGAAACGGACGGT-GATCC 24416936 Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGA 108578 ||||||||| ||| |||| ||| || ||||||| || ||||| ||| | |||| | Sbjct 24416935 ACACAACGCGAACCGGGGCTTCCTGTATGCGCACGTCGGCTGGCTGATGCTTCGCAAGCA 24416876 Query 108579 CCCCGACGTG-ATCTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGG 108637 ||| || ||| ||| | || || || || ||| | ||||| | |||||||| Sbjct 24416875 CCCGGA-GTGCATCAAGAAGGGCCGGCTGATCGATATGTCCGACATCATCAGCGATCCGG 24416817 Query 108638 TGGTAGTGTGGCACACCAAGTA 108659 | ||| || ||| |||||| Sbjct 24416816 TCGTACAGTTCCACCACAAGTA 24416795 Score = 86.0 bits (94), Expect = 5e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 108889 GGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTG 108948 ||||| |||||||||||||||||||| |||||||| | ||||||||||| |||||| || Sbjct 24410864 GGCGAAGGATGGCACAACTACCACCATGTGTTCCCGTGGGACTACAAGGCGGCCGAGCTG 24410805 Query 108949 GGGAACGACT 108958 || ||| ||| Sbjct 24410804 GGCAACTACT 24410795 Score = 82.4 bits (90), Expect = 6e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| | ||||| |||||||||||||||||||| |||||||| | ||||||||||| | Sbjct 24414433 TGGCCATGGGCGAAGGATGGCACAACTACCACCATGTGTTCCCGTGGGACTACAAGGCGG 24414374 Query 108941 CCGAGTTGGGGAACGACT 108958 ||||| | || ||| ||| Sbjct 24414373 CCGAGCTCGGCAACTACT 24414356 >seq7 Length=7675037 Score = 89.7 bits (98), Expect = 4e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 108870 GGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGA 108929 |||||| |||| || ||||||| |||||||||||||| |||||||||||||| | || Sbjct 332863 GGTGGCTTCGTTCGCATTCGGCGAAGGATGGCACAACTATCACCACGTGTTCCCGTGGGA 332922 Query 108930 CTACAAGGCCGCCGAGTTGGGGAA 108953 ||||||| | |||||| |||| || Sbjct 332923 CTACAAGACGGCCGAGCTGGGCAA 332946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381771357614640