Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq14 259 4e-64 seq4 87.8 2e-12 >seq14 Length=2944040 Score = 259 bits (286), Expect = 4e-64 Identities = 949/1473 (64%), Gaps = 30/1473 (2%) Strand=Plus/Plus Query 122877 TATTTGaaaaaaaTCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTC 122936 |||||| || ||| ||| |||| | | ||| | ||||||||| | ||||| ||| Sbjct 112065 TATTTGTTGAAGATCAAGGGAAAGATTGTCGAGAGACCGCAACATATGTTGATGCGTGTC 112124 Query 122937 GCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCT 122996 ||||| ||| | ||||| ||||| || |||| ||| || ||| || || | || Sbjct 112125 GCTATTGGCATCCACGGCGAGGACATTGAGGCAGCGATCGAGACGTACAATCTGCTTTCG 112184 Query 122997 CAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAG 123056 | | || || ||||| ||| || |||| || || | ||| || |||||| Sbjct 112185 GAGCGTTACTTTACCCACGCTTCTCCGACCATGTTTGCGGCGGCCACACAGCGTCCTCAG 112244 Query 123057 TTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACT 123116 | ||||| || ||| |||| ||| || || || |||||| |||||||| || ||| Sbjct 112245 CTTTCTTCTTGCTTTCTGCTGACCATGTCGGACGATAGCATCGAAGGTATCTACGATACT 112304 Query 123117 TTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGAC 123176 | | ||||| ||||| || |||| | ||| || || || |||| |||||| | Sbjct 112305 CTAAAGCAATGCGCATTGATCTCGAAATCGGCCGGTGGTATCGGACTGAATGTGCACTGC 112364 Query 123177 GTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCC 123236 | | | |||| |||| |||| |||| || | |||||| | | | Sbjct 112365 ATCCGTGCGAAGGGAACGTACATCTCCGGCACGAACGGTATTTCGAACGGGCTGGTACCG 112424 Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAA 123293 ||||| || || ||||| ||| | | || |||| || |||||||| || ||| | Sbjct 112425 ATGCTACGTGTGTACAACAACACGGCAAGGTACGTTGATCAGGGCGGTAATAAGCGCCCA 112484 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 |||||| | || ||||| || ||||||||||| | |||||||| || ||| | || | Sbjct 112485 GGCGCGTTTGCTATCTACCTCGAACCGTGGCATGGTGATGTGTTTGAGTTTCTGGATCTG 112544 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 || |||| || ||| || || || ||| |||| |||||| | ||| || Sbjct 112545 AAGAAAAACACCGGCAAGGAGGAGGTTCGTGCTCGGGATATGTTCTACGCTCTGTGGATA 112604 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGG---CGTGTGGTCGCTCATGTGTCCC 123470 || ||| |||| ||| || || | | ||| | |||| || | ||||| ||| Sbjct 112605 CCGGATCTGTTCATGAAGCGTGTGGAGG-CGAATGAAACGTGGAGTT--TGATGTGCCCC 112661 Query 123471 GATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAA 123530 | |||||||| || ||| | ||| | |||| || || ||||| || | Sbjct 112662 CACGATTGTCCCGGGCTGGCCGATTCATGGGGCGAAGAGTTCGAGAAGCTGTACACGGGA 112721 Query 123531 TACGAGCGCGAAGGCAAACAGGTTA---GTCAGGTTCCGGCACGTGATTTGTTCAAATTT 123587 |||||| || || | ||| |||| || ||| | ||| ||| ||| Sbjct 112722 TACGAGAAAGAGGGT---CGCTTTATACGTCAAGTGAAGGCGCAAGATCTGTGG---TTT 112775 Query 123588 ---ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGC 123644 || ||||| |||| || ||||| || ||||||||||| ||||| || || ||| Sbjct 112776 GCGATCATCGAGTCACAGGTGGAAACGGGCGTACCGTACATGCTGTACAAGGATGCGTGC 112835 Query 123645 AACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAA 123704 || | |||| ||| ||| ||| | || || || ||||| ||| |||||| | || Sbjct 112836 AATCGCAAAAGCAACCAGCAAAACATTGGCACTATCAAATGCTCTAACCTTTGCACTGAG 112895 Query 123705 ATTATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG 123762 || | ||||| | ||| | || |||||||||| || |||||||| |||||| ||| Sbjct 112896 ATAGTGGAATATTCGTCGAAG--GACGAAGTGGCCGTATGCAATTTGGCCTCGATT-GCG 112952 Query 123763 TGAATCGT-TGCGTCGAAAACGG-CGCTTTTA--ATTTCCAAACGCTCAAACGCATAACA 123818 | | | | | || | || || || ||||| | | ||| || | | Sbjct 112953 TTGAACATGTTTGTGCAGCCCGATCGTACGTACGATTTCGAGAAGCTGAAGGAGGTCGCC 113012 Query 123819 AAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAA 123878 || | || | ||| | ||||| || || || || || | || || || |||| Sbjct 113013 AAGATCGTGACACGCAATCTTAACAAGATCATTGACGTGAACTACTACCCGGTGCCGGAA 113072 Query 123879 GCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGAC 123938 ||| || || || ||| | ||| |||| | || | || || ||||||| Sbjct 113073 GCGAAGCGCTCGAACATGCGCCACCGTCCGATCGGCATCGGTGTCCAGGGTATGGCCGAT 113132 Query 123939 GCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAA 123998 ||||| | || || || | |||||||| || || |||| || ||||||| |||| Sbjct 113133 GCGTTCATTTTGATGGGCTTTCCGTACGAGAGTGAGCAAGCGCAGAAGCTTAATCAGCAA 113192 Query 123999 ATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCAC 124058 ||| ||||| || || || || || |||| || ||||||||| | || | | Sbjct 113193 ATATTTGAAACCATCTACTATGGAGCGCTGGAAGCTAGCTGCGAATTGGCCGCCAAGGAT 113252 Query 124059 GGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATG 124118 || ||||||| | |||| || | |||| ||| || ||| |||||||||||||| Sbjct 113253 GGGCCGTACGAGACGTACGAAGGTTGTCCGGTAAGCAAGGGCATTCTGCAGTACGACATG 113312 Query 124119 TGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACG 124178 ||||| |||||| || ||||| | ||| | || || || || | | | Sbjct 113313 TGGAACAAGGAACCGACGGATCTGTGGAATTGGGTGGCGTTGAAGGAAAAGATTGCAAAG 113372 Query 124179 CACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATT 124238 ||||| | |||||||| ||| || | || ||||| || || | ||||||||||| Sbjct 113373 CACGGCATTCGTAACTCACTGCTGCTAGCACCGATGCCAACAGCTTCGACTGCTCAAATA 113432 Query 124239 TTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTA 124298 | || ||||| || || ||||| |||| ||| || | ||| ||||||||| | Sbjct 113433 CTGGGCAACAATGAGTCGTTCGAACCGTACACGTCGAACGTCTACAACCGACGAGTGCTT 113492 Query 124299 GCCGGCGATTTTCAAGTGATAAATCATCATTTG 124331 | ||||| ||||| || |||| |||||| || Sbjct 113493 TCGGGCGAGTTTCAGGTTGTAAACCATCATCTG 113525 Score = 253 bits (280), Expect = 2e-62 Identities = 948/1473 (64%), Gaps = 30/1473 (2%) Strand=Plus/Plus Query 122877 TATTTGaaaaaaaTCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTC 122936 |||||| |||||| ||| |||| | | ||| | || |||||| | ||||| ||| Sbjct 126776 TATTTGTTGAAAATCAAGGGAAAGATTGTCGAGAGACCGCAGCATATGTTGATGCGTGTC 126835 Query 122937 GCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCT 122996 || || ||| | ||||| ||||| || |||| ||| || ||| || || | || Sbjct 126836 GCCATTGGCATCCACGGCGAGGACATTGAGGCAGCGATCGAGACGTACAATCTGCTTTCA 126895 Query 122997 CAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAG 123056 | | || || ||||| ||| || |||| || || | ||| || |||||| Sbjct 126896 GAGCGTTACTTTACCCACGCTTCTCCGACCATGTTTGCGGCGGCCACACAGCGTCCTCAG 126955 Query 123057 TTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACT 123116 | ||||| || ||| |||| ||| || || || |||||| |||||||| || ||| Sbjct 126956 CTTTCTTCTTGCTTTCTGCTGACCATGTCGGACGATAGCATCGAAGGTATCTACGATACT 127015 Query 123117 TTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGAC 123176 | | ||||| ||||| || |||| | ||| || || || |||| |||||| | Sbjct 127016 CTAAAGCAATGCGCATTGATCTCGAAATCGGCCGGTGGTATCGGACTGAATGTGCACTGC 127075 Query 123177 GTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCC 123236 | | | |||| |||| |||| |||| || | |||||| | | | Sbjct 127076 ATCCGTGCGAAGGGAACGTACATCTCCGGCACGAACGGTATTTCGAACGGGCTGGTACCG 127135 Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAA 123293 ||||| || || ||||| ||| | | || |||| || |||||||| || ||| | Sbjct 127136 ATGCTACGTGTGTACAACAACACGGCAAGGTACGTTGATCAGGGCGGTAATAAGCGCCCA 127195 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 |||||| | || ||||| || ||||||||||| | |||||||| || ||| | || | Sbjct 127196 GGCGCGTTTGCTATCTACCTCGAACCGTGGCATGGTGATGTGTTTGAGTTTCTGGATCTG 127255 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 || |||| || ||| || || || ||| |||| |||||| | ||| || Sbjct 127256 AAGAAAAACACCGGCAAGGAGGAGGTTCGTGCTCGGGATATGTTCTACGCTCTGTGGATA 127315 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGG---CGTGTGGTCGCTCATGTGTCCC 123470 || ||| |||| ||| || || | | ||| | |||| || | ||||| ||| Sbjct 127316 CCGGATCTGTTCATGAAGCGTGTGGAGG-CGAATGAAACGTGGAGTT--TGATGTGCCCC 127372 Query 123471 GATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAA 123530 | |||||||| || ||| | ||| | |||| || || ||||| || | Sbjct 127373 CACGATTGTCCCGGGCTGGCCGATTCATGGGGCGAAGAGTTCGAGAAGCTGTACACGGGA 127432 Query 123531 TACGAGCGCGAAGGCAAACAGGTTA---GTCAGGTTCCGGCACGTGATTTGTTCAAATTT 123587 |||||| || || | ||| |||| || ||| | ||| ||| ||| Sbjct 127433 TACGAGAAAGAGGGT---CGCTTTATACGTCAAGTGAAGGCGCAAGATCTGTGG---TTT 127486 Query 123588 ---ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGC 123644 || ||||| |||| || ||||| || ||||||||||| ||||| || || ||| Sbjct 127487 GCGATCATCGAGTCACAGGTGGAAACGGGCGTACCGTACATGCTGTACAAGGATGCGTGC 127546 Query 123645 AACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAA 123704 || | |||| ||| ||| ||| | || || || ||||| ||| |||||| | || Sbjct 127547 AATCGCAAAAGCAACCAGCAAAACATTGGCACTATCAAATGCTCTAACCTTTGCACTGAG 127606 Query 123705 ATTATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG 123762 || | ||||| | ||| | || |||||||||| || |||||||| |||||| ||| Sbjct 127607 ATAGTGGAATATTCGTCGAAG--GACGAAGTGGCCGTATGCAATTTGGCCTCGATT-GCG 127663 Query 123763 TGAATCGT-TGCGTCGAAAACGG-CGCTTTTA--ATTTCCAAACGCTCAAACGCATAACA 123818 | | | | | || | || || || ||||| | | ||| || | | Sbjct 127664 TTGAACATGTTTGTGCAGCCCGATCGTACGTACGATTTCGAGAAGCTGAAGGAGGTCGCC 127723 Query 123819 AAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAA 123878 || | || | ||| | ||||| || || || || || | || || || |||| Sbjct 127724 AAGATCGTGACACGCAATCTTAACAAGATCATTGACGTGAACTACTACCCGGTGCCGGAA 127783 Query 123879 GCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGAC 123938 ||| || || || ||| | ||| |||| | || | || || ||||||| Sbjct 127784 GCGAAGCGCTCGAACATGCGCCACCGTCCGATCGGCATCGGTGTCCAGGGTATGGCCGAT 127843 Query 123939 GCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAA 123998 ||||| | || || || | |||||||| || || |||| || ||||||| |||| Sbjct 127844 GCGTTCATTTTGATGGGCTTTCCGTACGAGAGTGAGCAAGCGCAGAAGCTTAATCAGCAA 127903 Query 123999 ATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCAC 124058 ||| ||||| || || || || || |||| || ||||||||| | || | | Sbjct 127904 ATATTTGAAACCATCTACTATGGAGCGCTGGAAGCTAGCTGCGAATTGGCCGCCAAGGAT 127963 Query 124059 GGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATG 124118 || ||||||| | |||| || | |||| ||| || ||| |||||||||||||| Sbjct 127964 GGGCCGTACGAGACGTACGAAGGTTGTCCGGTAAGCAAGGGCATTCTGCAGTACGACATG 128023 Query 124119 TGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACG 124178 ||||| |||||| || ||||| | ||| | || || || || | | | Sbjct 128024 TGGAACAAGGAACCGACGGATCTGTGGAATTGGGTGGCGTTGAAGGAAAAGATTGCAAAG 128083 Query 124179 CACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATT 124238 ||||| | |||||||| ||| || | || ||||| || || | ||||||||||| Sbjct 128084 CACGGCATTCGTAACTCACTGCTGCTAGCACCGATGCCAACAGCTTCGACTGCTCAAATA 128143 Query 124239 TTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTA 124298 | || ||||| || || ||||| |||| ||| || | ||| ||||||||| | Sbjct 128144 CTGGGCAACAATGAGTCGTTCGAACCGTACACGTCGAACGTCTACAACCGACGAGTGCTT 128203 Query 124299 GCCGGCGATTTTCAAGTGATAAATCATCATTTG 124331 | ||||| ||||| || |||| |||||| || Sbjct 128204 TCGGGCGAGTTTCAGGTTGTAAACCATCATCTG 128236 >seq4 Length=15719670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || |||||||| ||||| || || || | Sbjct 15451525 CCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCC--G 15451468 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| |||| || || || ||| | |||| || ||||| ||||| | Sbjct 15451467 ACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAG 15451408 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | || ||||| || || || || || || | ||| | ||||| || | ||||| Sbjct 15451407 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGA 15451348 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| | ||||||||||| || ||||| || ||||| ||||| Sbjct 15451347 CCTCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 15451299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001448487600