Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq19 98.7 1e-15 seq2 82.4 9e-11 >seq19 Length=1744624 Score = 98.7 bits (108), Expect = 1e-15 Identities = 186/269 (69%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 175901 GTGAAGATGTACCTCGTTTGAGACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAATTG 175959 |||||||||||||||| | ||| ||| || || ||| | | ||||| ||||| || Sbjct 912342 GTGAAGATGTACCTCGGGCTGG-CGCTATCCTTACCGCCCGTCAACCGCGTACCAAACTG 912284 Query 175960 ACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGAC 176019 ||| | || | || || ||||| ||||| ||| | |||| | ||||| |||| Sbjct 912283 ACCGCCCGGGTACAGCAGGTTGATGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGAT 912224 Query 176020 AATCGTATCCGCGAGGGAGACT--TCACCGTGATGGTAGGCCGACTTGTCCGCCACATAC 176077 ||||| | || | |||| || ||||||||||| || ||| | |||||||| | Sbjct 912223 GATCGT--CGAACAGAGCGACTGCTCGCCGTGATGGTACGCGGACATTTCCGCCACCGAA 912166 Query 176078 GCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATG 176137 | |||||||| |||||||||| ||| |||| ||| | |||||||| | ||| Sbjct 912165 CCTGCCAACTGGGCCACCTTCACCTCGCGCTTGTCGTTACGCTTGAAGCACGTAAACAGC 912106 Query 176138 ACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 ||||| | ||| ||||| | ||||| Sbjct 912105 ACCTTCCGCTGGCCCGGCTTCAACCCGTC 912077 >seq2 Length=22738934 Score = 82.4 bits (90), Expect = 9e-11 Identities = 202/300 (67%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 10552 TGGCTCGTGAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTC 10611 ||| | |||| ||||||||||| | || | |||| ||| |||||||||||| Sbjct 20260790 TGGATAGTGATCAATTATCGCGAGGCGTACAACATGTTTGCTTGCAACGGTATTCTCTTT 20260731 Query 10612 AACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGAT-GGTA 10669 ||||||||||| ||||| || || | | || ||||| || ||||| || | ||| Sbjct 20260730 AACCACGAGTCGCCCCGGCGAGGTGAGAACTTTGTGACGCGTAAAATCACTCGCTCGGTG 20260671 Query 10670 TCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGA 10729 | || | || | || || ||||| | | || | || || ||| | | || Sbjct 20260670 GCGAAGATTTC--GCTCGGCCAGCAGGAGTGCGTCGAGCTCGGTAATCTCGATTCGAAGC 20260613 Query 10730 GGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAG 10789 | |||||||| ||||| || ||||| || ||||| |||||| | | | || | ||||| Sbjct 20260612 GTGACTGGGGCCACGCAAAAGACTACGTCGAAGCAATGTGGTTGATGATGCAGC-AGAAG 20260554 Query 10790 -AGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 10848 || |||| || | ||| | |||||||| || || || || || | || || || ||| Sbjct 20260553 CAGCCGGAAGATTTCGTCATTGCGACGGGCGAAACGCATTCGGTGCGAGAATTTGTCGAG 20260494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504822659600