Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 246 5e-60 seq14 181 2e-40 >seq2 Length=22738934 Score = 246 bits (272), Expect = 5e-60 Identities = 488/713 (68%), Gaps = 12/713 (2%) Strand=Plus/Plus Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCA 159803 |||||||| || ||||| || || ||||| || | ||||| | || ||||| || || | Sbjct 19671859 CAGCAACCGATCCGCCACGAACTCAATGTA-CTGCGACATCAGTTCGCAGTTCATGCCGA 19671917 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 ||| || || || || | || ||| ||||||| ||| ||| ||||||| ||| | Sbjct 19671918 GCATGTCGACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCACGACCGCATCGCGGA 19671977 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 |||| || || || || | | ||| || || | | | | |||| |||| Sbjct 19671978 TGATCTCCGTCACGCGCTCCTTCGACGGTTTCTGCACCA---GATACCGGAACATCAGGC 19672034 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | |||||||| ||||||||||||||||| || ||||| | |||||| || | | || | Sbjct 19672035 AGGCAAAGTCACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTCAGCC 19672094 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 ||||||| | || ||| || ||||| || ||||||||||| || ||||| |||| Sbjct 19672095 CCGGCATTAGGCCGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCACTAAAGAAGA 19672154 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGG 160103 | ||||| || || || ||||| || | | ||| ||||| ||| || || | Sbjct 19672155 TGCCCTCGACTGCAGCGAACGCAACCACACGCTCCCCAAAGTTGGCCTTCTTGCTGGAGA 19672214 Query 160104 TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCG-CTCGACGGCGTTA 160162 |||| | ||||| || |||||||| | |||||||| ||| |||| ||||| Sbjct 19672215 TCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTTACGCACGGCA-GCGTTTCGATCGCGTTG 19672273 Query 160163 AACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATT 160222 |||| ||| |||||||| || || || | |||||| |||||||||| Sbjct 19672274 AACAGATACTCCCGCTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATT 19672333 Query 160223 TCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC 160282 || |||||| || || || || |||||||| |||||| | |||||| | Sbjct 19672334 TCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACC 19672393 Query 160283 TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCA 160342 ||||||||||| |||| | | ||||||| |||| || | ||||| | ||| || Sbjct 19672394 TGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTTACGATACCGTCCGAGGCGGCG 19672453 Query 160343 AAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTG-TTGAGTCTCTTTTCCCA 160401 ||||| || | |||||| ||||||||||| | |||| ||| | ||||| | |||||| Sbjct 19672454 AAGAAGGCAAGCACGTGCGAGATGAAATGACGCTCG-CTTGGTTTGAG---CGATTCCCA 19672509 Query 160402 GTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCT 160454 || | ||| ||| | | || || ||||||||| | |||| || ||||| Sbjct 19672510 GTCTTTCATGTCCTTCGACAGGTCCACCTCTTCCACCGTCCAGAAGGAAGCCT 19672562 >seq14 Length=2944040 Score = 181 bits (200), Expect = 2e-40 Identities = 344/503 (68%), Gaps = 4/503 (1%) Strand=Plus/Minus Query 203829 GAACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGAT 203888 ||| |||||| ||||| ||||||||||| || || || ||||| ||| | | | || || Sbjct 113874 GAAGCTTCGTTTTGTCGACCGTGAACTGGATCGCATTTACGGCCGGCTTCGTGCGCAAAT 113815 Query 203889 AGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGC 203948 |||||||||| ||||| | ||| ||| |||| |||| | ||| || || | ||||| | Sbjct 113814 AGTACATGCCAGTCTTCAAACCCATCTTCCACGCGTAAAAGTGGATCGAGGTTAGTTTAC 113755 Query 203949 TCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCC 204008 |||||| ||||||| ||| ||||| | || ||| ||||||||||| | | | Sbjct 113754 CGTAGTTGGGTTCGGCCACGTGTATGTTGAACGATTGGGACTGGTCGATGAACGCTCCAC 113695 Query 204009 GATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGT 204068 |||| || ||||| | ||| || || ||| |||||||| ||||| ||| ||| | Sbjct 113694 GATCGGCCGCCATTTGGATGCACGTTTTAACCGATATCTCCCAAACCGTTTTGTACAGAT 113635 Query 204069 CTCTGGTGTGTTGAGGCACATCTTC-CCACGTCCT-GATCGAGCCGTTGTCGGCCATCAG 204126 | | || | || || ||| | | | || |||||| ||||||| |||| | Sbjct 113634 CGCGCACGTCCTTTGG--TATTTTCTCTATTTTCTGGATCGATCCGTTGTGTGCCAGAAT 113577 Query 204127 TCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGG 204186 | | || | || || |||||| || | || |||| ||| | ||| || | Sbjct 113576 GGTGTTTTTCATTTCATCGTCCCACAGACCGTGCGTGGTCAGGTCCTTGATCAGATGATG 113517 Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246 ||| | | |||||| || || || ||||| | |||| || | | ||| ||| | || Sbjct 113516 GTTTACAACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTAGACGTTCGACGTGTACGG 113457 Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAG 204306 |||||||| ||| |||||||| | || ||||| || || || ||||| || || || Sbjct 113456 TTCGAACGACTCATTGTTGCCCAGTATTTGAGCAGTCGAAGCTGTTGGCATCGGTGCTAG 113397 Query 204307 GAGCAGGGAGTTGCGCACACCGT 204329 ||||| ||||| || | |||| Sbjct 113396 CAGCAGTGAGTTACGAATGCCGT 113374 Score = 176 bits (194), Expect = 7e-39 Identities = 343/503 (68%), Gaps = 4/503 (1%) Strand=Plus/Minus Query 203829 GAACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGAT 203888 ||| |||||| ||||| ||||||||||| || || || ||||| ||| | | | || || Sbjct 128585 GAAGCTTCGTTTTGTCGACCGTGAACTGGATCGCATTTACGGCCGGCTTCGTGCGCAAAT 128526 Query 203889 AGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGC 203948 |||||||||| ||||| | ||| ||| |||| ||| | ||| || || | ||||| | Sbjct 128525 AGTACATGCCAGTCTTCAAACCCATCTTCCACGCGTGAAAGTGGATCGAGGTTAGTTTAC 128466 Query 203949 TCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCC 204008 |||||| ||||||| ||| ||||| | || ||| ||||||||||| | | | Sbjct 128465 CGTAGTTGGGTTCGGCCACGTGTATGTTGAACGATTGGGACTGGTCGATGAACGCTCCAC 128406 Query 204009 GATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGT 204068 |||| || ||||| | ||| || || ||| |||||||| ||||| ||| ||| | Sbjct 128405 GATCGGCCGCCATTTGGATGCACGTTTTAACCGATATCTCCCAAACCGTTTTGTACAGAT 128346 Query 204069 CTCTGGTGTGTTGAGGCACATCTTC-CCACGTCCT-GATCGAGCCGTTGTCGGCCATCAG 204126 | | || | || || ||| | | | || |||||| ||||||| |||| | Sbjct 128345 CGCGCACGTCCTTTGG--TATTTTCTCTATTTTCTGGATCGATCCGTTGTGTGCCAGAAT 128288 Query 204127 TCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGG 204186 | | || | || || |||||| || | || |||| ||| | ||| || | Sbjct 128287 GGTGTTTTTCATTTCATCGTCCCACAGACCGTGCGTGGTCAGGTCCTTGATCAGATGATG 128228 Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246 ||| | | |||||| || || || ||||| | |||| || | | ||| ||| | || Sbjct 128227 GTTTACAACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTAGACGTTCGACGTGTACGG 128168 Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAG 204306 |||||||| ||| |||||||| | || ||||| || || || ||||| || || || Sbjct 128167 TTCGAACGACTCATTGTTGCCCAGTATTTGAGCAGTCGAAGCTGTTGGCATCGGTGCTAG 128108 Query 204307 GAGCAGGGAGTTGCGCACACCGT 204329 ||||| ||||| || | |||| Sbjct 128107 CAGCAGTGAGTTACGAATGCCGT 128085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152118773600