Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9 156 5e-33 seq1 123 3e-23 seq4 122 1e-22 >seq9 Length=6651167 Score = 156 bits (172), Expect = 5e-33 Identities = 175/233 (75%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||| | ||| | |||| ||||| || |||||| ||||| |||||||||| Sbjct 534982 TGCCTCCTCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGG 535041 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| |||| || ||||||||||||||||| |||| |||||||| || | || Sbjct 535042 ACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCG 535101 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---T 46541 | | | ||| |||||| |||||| ||||| || | | ||| || |||| | Sbjct 535102 GGATTCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATC---CGATGGCT 535158 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || |||| |||||||| ||||| |||||||| || || ||||| |||||| Sbjct 535159 CGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATT 535211 Score = 143 bits (158), Expect = 3e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| || ||||||||||||||||| Sbjct 534616 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAA 534675 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | ||| | | |||||||||| |||||| ||||| | Sbjct 534676 GATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 534735 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||| || || || || |||| |||||||| ||||| |||||||| || || Sbjct 534736 CTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCAC 534795 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 534796 GAAAATCTGCAT 534807 >seq1 Length=30017264 Score = 123 bits (136), Expect = 3e-23 Identities = 169/235 (72%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||| | | ||| | |||||| || | || |||||| |||||||||||||| || Sbjct 15159549 GCCTCCACGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGA 15159608 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || || || | || || |||||||| |||||||| |||| |||||||| || | || Sbjct 15159609 CAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGG 15159668 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---TC 46542 | || ||||| ||| ||||| ||| | || | | ||||| |||| || Sbjct 15159669 GATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTC---CGATGGCTC 15159725 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| |||| ||||||||| || || ||||| || || || ||||||||||| ||| Sbjct 15159726 CACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCATGTTG 15159780 >seq4 Length=15719670 Score = 122 bits (134), Expect = 1e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||||||||| ||||| || ||||| | || || Sbjct 4750573 CACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCCTC 4750632 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| || | |||||||| || | ||| | | |||||||||| Sbjct 4750633 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTG 4750692 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | || | | ||| || | || || || | || ||||| || Sbjct 4750693 GATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 4750752 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 ||||| || ||||| || ||||| ||||| ||| || Sbjct 4750753 ACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAAC 4750789 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || |||||||| | || || ||||||||||||||||| Sbjct 15451489 TCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 15451430 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||| || | || | | ||||||||| |||||| ||| | | Sbjct 15451429 ATCAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTT 15451370 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || || || | |||||||||||||| || || ||||| || Sbjct 15451369 TCGATCGTGTCCGAGGGCTCGACCTCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACG 15451310 Query 46583 AAGATTTGCATTTT 46596 || || ||||| || Sbjct 15451309 AAAATCTGCATGTT 15451296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236209701200