Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 453 1e-122 seq9 143 3e-29 seq4 131 2e-25 >seq2 Length=22738934 Score = 453 bits (502), Expect = 1e-122 Identities = 534/713 (75%), Gaps = 12/713 (2%) Strand=Plus/Plus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 |||| || || ||||||||||| ||||| |||||||| |||||| || | || ||| Sbjct 19671860 AGCAACCGATCCGCCACGAACTCAATGTACTGCGACATCAGTTCGCAGTTCATGCCGAGC 19671919 Query 132781 A-GACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 | | || |||||||| || | || || || |||||||| ||||||| ||| || Sbjct 19671920 ATGTCG-ACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCACGACCGCATCGCGGAT 19671978 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGT---TGCACCAAATGCTTGAACATCAAGCA 132896 ||| ||| | |||||| || ||| | || ||||||| || | |||||||| ||| Sbjct 19671979 GATCTCCGTCACGCGCTCC---TTCGACGGTTTCTGCACCAGATACCGGAACATCAGGCA 19672035 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 |||||||| || |||| |||||||| | || || || ||||| ||| |||| || Sbjct 19672036 GGCAAAGTCACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTCAGCCC 19672095 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 ||||| |||||||| || || ||||| || ||||| || || ||||| |||||||| Sbjct 19672096 CGGCATTAGGCCGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCACTAAAGAAGAT 19672155 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGAT 133076 ||||||||| || ||||| || |||| ||||| || || |||| | ||||||| ||| Sbjct 19672156 GCCCTCGACTGCAGCGAACGCAACCACACGCTCCCCAAAGTTGGCCTTCTTGCTGGAGAT 19672215 Query 133077 CCAGCGCAGCGCCCATTCGGCCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCA 133135 |||| ||||||||| |||||||| |||||| |||||||||| ||||||||| ||||| | Sbjct 19672216 CCAGTTCAGCGCCCAGTCGGCCTTCTTCTTT-ACGCACGGCAGCGTTTCGATCGCGTTGA 19672274 Query 133136 ACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTT 133195 ||| | ||| | || | || | ||| |||||||| || ||| ||||||| Sbjct 19672275 ACAGATACTCCCGCTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATTT 19672334 Query 133196 CCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCT 133255 | ||| ||||||||||| || || ||||| ||||| ||||| || ||||| ||||| Sbjct 19672335 CGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCT 19672394 Query 133256 GCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGA 133315 |||| || || ||| ||||| |||||||| || || ||||| ||||| |||||||| Sbjct 19672395 GCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTTACGATACCGTCCGAGGCGGCGA 19672454 Query 133316 AAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG-CTCCCAGTCG 133374 | ||||| ||||||||| ||||||||| |||||| | | ||| |||| |||||||| Sbjct 19672455 AGAAGGCAAGCACGTGCGAGATGAAATGACGCTCGCT-TGGTTTGAGCGATTCCCAGTCT 19672513 Query 133375 CGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 | ||||||| |||||||||||||| || || ||||| || || ||||| || Sbjct 19672514 TTCATGTCCTTCGACAGGTCCACCTCTTCCACCGTCCAGAAGGAAGCCTCCGC 19672566 >seq9 Length=6651167 Score = 143 bits (158), Expect = 3e-29 Identities = 182/242 (75%), Gaps = 10/242 (4%) Strand=Plus/Minus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 ||| | | |||||| || ||||| || ||||| || ||||| |||||||| | || ||| Sbjct 535219 TTTCATAGAATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTC 535160 Query 38295 GAGGCCACCG---AC-AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAAT 38350 ||| ||| || || | || | |||| | || | || |||| |||||||||||||| Sbjct 535159 GAG-CCATCGGATACGATCGAG--AACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAAT 535104 Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||||| || || ||||| || || | ||| ||||| |||||||| |||| ||||| | Sbjct 535103 -CCCGCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTC 535045 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | ||||||||||||||| ||||| |||| |||| ||||| || ||| || |||| | Sbjct 535044 TGTCCGACTACAACATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGAGGAG 534985 Query 38470 GC 38471 || Sbjct 534984 GC 534983 Score = 125 bits (138), Expect = 7e-24 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| | || |||||| | | Sbjct 534807 ATGCAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 534748 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 || | | | |||| | || | || |||| ||||| |||||||| |||||| || | Sbjct 534747 GATACGATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAAT-CCCGCCAGATC 534690 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| |||| ||||| || |||||||| Sbjct 534689 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACA 534630 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| |||| || || ||||| || || Sbjct 534629 ACATCCAGAAGGAGTCGACCCTCCACTTGGTTCTTCG 534593 >seq4 Length=15719670 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 38237 TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296 || ||| ||||| || ||||| ||||| ||||| |||||||||||||| | || ||||| Sbjct 15451292 TAGAAACATGCAGATTTTCGTGAAAACACTCACCGGCAAAACCATCACTCTTGAGGTCGA 15451351 Query 38297 GGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | || | |||| | ||| | || | || |||| ||||| || ||||| || | Sbjct 15451352 GCCCTCGGACACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCC 15451411 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 || || ||||| || || | ||| ||||| |||||||| || | ||||| || || Sbjct 15451412 GGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCGGA 15451471 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| |||||| | || || || ||||||| || Sbjct 15451472 CTACAACATCCAGAAGGAATCCACCCTTCACCTGGTGCTCCG 15451513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170861830400