Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq14 96.9 4e-15 seq2 95.1 1e-14 >seq14 Length=2944040 Score = 96.9 bits (106), Expect = 4e-15 Identities = 286/435 (66%), Gaps = 6/435 (1%) Strand=Plus/Minus Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457 || ||||| ||| | ||| ||||| || || || | ||| |||||| ||||| | || Sbjct 113831 CGGCTTCGTGCGCAAATAGTACATGCCAGTCTTCAAACCCATCTTCCACGCGTAAAAGTG 113772 Query 109458 CATTGAAGAGAGTTTGGAAAGT-GTCGGACTCT-CCATAAACAAGTTCATCGACTGAGAC 109515 || || | ||||| | || || || || ||| | ||| | ||| || ||| Sbjct 113771 GATCGAGGTTAGTTT--ACCGTAGTTGGGTTCGGCCACGTGTATGTTGAACGATTGGGAC 113714 Query 109516 TGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTA-ATTTC 109574 || |||||||| |||||||| |||||||| | |||| || ||| | | || || Sbjct 113713 TGGTCGATGAACGCTCCACGATCGGCCGCCATTTGGATGC-ACGTTTTAACCGATATCTC 113655 Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634 ||| || || ||||||| || | || | || || | | | || || || || || Sbjct 113654 CCAAACCGTTTTGTACAGATCGCGCACGTCCTTTGGTATTTTCTCTATTTTCTGGATCGA 113595 Query 109635 GCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAG 109694 || || ||| | ||||| || | ||| |||||| | | | || Sbjct 113594 TCCGTTGTGTGCCAGAATGGTGTTTTTCATTTCATCGTCCCACAGACCGTGCGTGGTCAG 113535 Query 109695 ATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTA 109754 || | | ||||| | ||| || || ||| || || | ||| |||||| ||| Sbjct 113534 GTCCTTGATCAGATGATGGTTTACAACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTA 113475 Query 109755 GATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGC 109814 || ||| | |||||| |||||||| ||||||||||||| || ||||| ||||| ||||| Sbjct 113474 GACGTTCGACGTGTACGGTTCGAACGACTCATTGTTGCCCAGTATTTGAGCAGTCGAAGC 113415 Query 109815 TGTGGGCATGGGAGC 109829 ||| ||||| || || Sbjct 113414 TGTTGGCATCGGTGC 113400 Score = 91.5 bits (100), Expect = 2e-13 Identities = 285/435 (66%), Gaps = 6/435 (1%) Strand=Plus/Minus Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457 || ||||| ||| | ||| ||||| || || || | ||| |||||| |||| | || Sbjct 128542 CGGCTTCGTGCGCAAATAGTACATGCCAGTCTTCAAACCCATCTTCCACGCGTGAAAGTG 128483 Query 109458 CATTGAAGAGAGTTTGGAAAGT-GTCGGACTCT-CCATAAACAAGTTCATCGACTGAGAC 109515 || || | ||||| | || || || || ||| | ||| | ||| || ||| Sbjct 128482 GATCGAGGTTAGTTT--ACCGTAGTTGGGTTCGGCCACGTGTATGTTGAACGATTGGGAC 128425 Query 109516 TGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTA-ATTTC 109574 || |||||||| |||||||| |||||||| | |||| || ||| | | || || Sbjct 128424 TGGTCGATGAACGCTCCACGATCGGCCGCCATTTGGATGC-ACGTTTTAACCGATATCTC 128366 Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634 ||| || || ||||||| || | || | || || | | | || || || || || Sbjct 128365 CCAAACCGTTTTGTACAGATCGCGCACGTCCTTTGGTATTTTCTCTATTTTCTGGATCGA 128306 Query 109635 GCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAG 109694 || || ||| | ||||| || | ||| |||||| | | | || Sbjct 128305 TCCGTTGTGTGCCAGAATGGTGTTTTTCATTTCATCGTCCCACAGACCGTGCGTGGTCAG 128246 Query 109695 ATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTA 109754 || | | ||||| | ||| || || ||| || || | ||| |||||| ||| Sbjct 128245 GTCCTTGATCAGATGATGGTTTACAACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTA 128186 Query 109755 GATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGC 109814 || ||| | |||||| |||||||| ||||||||||||| || ||||| ||||| ||||| Sbjct 128185 GACGTTCGACGTGTACGGTTCGAACGACTCATTGTTGCCCAGTATTTGAGCAGTCGAAGC 128126 Query 109815 TGTGGGCATGGGAGC 109829 ||| ||||| || || Sbjct 128125 TGTTGGCATCGGTGC 128111 >seq2 Length=22738934 Score = 95.1 bits (104), Expect = 1e-14 Identities = 296/449 (66%), Gaps = 12/449 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| || || || || || || || | ||| || || || |||||||| || || Sbjct 18556090 CGATCGAAGCGTCCCGGTCGAAGGAGCGCCTTATCCAGGATGTCAACACGGTTCGTCGCT 18556031 Query 11563 GCAATGACTACAA---TGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || | ||| || | | |||| |||| || |||||||| || || |||||| Sbjct 18556030 GCCAGGACCACCACATTCGTAGTCGTATTG---AATCCGTCCATCTCCACCAGCAGCTGG 18555974 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGA-ACGCTTCTTACC 11678 || | || | ||| ||||| || || || | | |||| ||||||| || Sbjct 18555973 TTAAGGGTGTTTTCCTGCTCAGAGT-GGCCACCAAAACTTTTGCCACCACGCTTCCGCCC 18555915 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 || ||||| || || |||||||| | || |||||| ||| |||||| |||| Sbjct 18555914 AACTGCGTCGATTTCGTCGATGAAGAGTATGCACGGTGCGTTCTTGCGTGCCATCGCGAA 18555855 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 | || || || ||| || ||| ||||| |||||||| || | ||| | | | || Sbjct 18555854 CATGTCCCGCACGCGCGACGGTCCCACACCGACGAACATTTCCAGGAACTCCGACCCGGA 18555795 Query 11799 ACACTG-AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 ||| | |||||| || || || | ||||| || | || ||||| || || || | Sbjct 18555794 -CACGGTAATGAACGGCACGTTCGCTTCACCGGCCGTTGCCTTCGCGAGCAGCGTTTTGC 18555736 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-ACTTCCAAAG 11916 | ||||| |||| || | || | || || ||| || || ||||| | || | | Sbjct 18555735 CTGTACCGGGTGGGCCCGTTAGCATTGCTCCTTTGGGAATTTTCGCACCGAGATCGATA- 18555677 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 || ||| || ||||||||||||| ||| Sbjct 18555676 TACTGCTGGGGGTTCTTGAGGAAGTTCAC 18555648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973717718000