Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 161 2e-34 seq4 129 1e-24 seq9 114 3e-20 >seq1 Length=30017264 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || |||||||| || | || || | |||||||| Sbjct 15159568 ACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCC 15159627 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || || ||||| |||||||| || || ||| Sbjct 15159628 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGA 15159687 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| ||||||||||| ||||| || || || | |||||| Sbjct 15159688 ATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTT 15159747 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || ||||| | |||||| Sbjct 15159748 CCGGTCAGAGTCTTGACGAAGATTTGCAT 15159776 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 194946 GGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGC 195005 ||| || || || |||||||| || | || | | |||||||| || | ||| || || Sbjct 15157071 GGATTCCTTCTGGATATTGTAGTCTGATAGGGCACGGCCATCTTCCAGATACTTTCCGGC 15157130 Query 195006 GAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGAC 195065 |||| ||| || || | | ||| ||||||| || | ||||| || ||| || Sbjct 15157131 GAAGTAAAGATACTGCTGATACGAAGGCGTGCCTTCCTTAACCTGAATCTTAGCCTTCAC 15157190 Query 195066 GTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTT 195125 | |||| ||||||||||| ||| ||||| || || | |||||||| |||| |||||| Sbjct 15157191 GATCTCGATGGTGTCCGATGGTTCAACTTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTT 15157250 Query 195126 TACGAACACTTGCA 195139 ||||| | ||||| Sbjct 15157251 GACGAAGATTTGCA 15157264 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || |||||||| || || || || ||||| || | ||| | | | ||||| | ||| Sbjct 15157291 TGGAGAGTGGAATCCTTCTGGATGTTGTAGTCTGACAGAATACGTCTATCTTTCAAATGC 15157350 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 | || ||||| || || || || || ||||| |||||||| || | ||||| ||| Sbjct 15157351 ATTCCGCTGAAGACCAGACGCTGGTGATCCGGAGGGATGCCTTCCTTACCCTGAATCTTT 15157410 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||| |||| ||||||||||| || || || || || | |||||||| || Sbjct 15157411 GCCTTCACGATCTCGATGGTGTCCGACGGCTCTACCTCCAGCGTGATGGTCTTTCCGTTC 15157470 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| ||||| | ||| || Sbjct 15157471 ATAGTTTTGACGAAGATTTGTAT 15157493 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 195017 GTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGG 195076 ||||||| || | ||| |||||||| ||||| ||||| || ||| |||||||| |||| Sbjct 15156914 GTTGTTGATCCGCAGGGATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCGATGG 15156973 Query 195077 TGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTT 195136 ||||||| ||||| || || || | |||||||| |||| ||| || | || | || Sbjct 15156974 TGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTAATAAAGATTT 15157033 Query 195137 GCAT 195140 |||| Sbjct 15157034 GCAT 15157037 >seq4 Length=15719670 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || ||||| || || ||||||||||||| || || | ||||| || Sbjct 4750574 ACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCCTCC 4750633 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || || || || || || || ||||| || Sbjct 4750634 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGG 4750693 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| || ||||| || || ||||| || || |||||||||| ||||| Sbjct 4750694 ATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTA 4750753 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | ||||| Sbjct 4750754 CCCGTGAGGGTTTTGACGAAGATCTGCAT 4750782 >seq9 Length=6651167 Score = 114 bits (126), Expect = 3e-20 Identities = 148/203 (73%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || || ||||| |||| ||||| | || || || |||||||| || Sbjct 535014 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCG 535073 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| || || || || ||||| || || || |||||||| || || || |||| Sbjct 535074 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCTTTGTCCTGGATCTTGGCCTTG 535133 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 |||||||| || || ||||| || || || || || | ||||| || |||| || Sbjct 535134 ACGTTCTCGATCGTATCCGATGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTC 535193 Query 195124 TTTACGAACACTTGCATT-TATG 195145 || ||||| | |||||| |||| Sbjct 535194 TTCACGAAGATCTGCATTCTATG 535216 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || || ||||| || || || ||||| |||| ||||| | || || || Sbjct 534598 AACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTC 534657 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || || ||||| || || || || ||||| || Sbjct 534658 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTG 534717 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||||||| || || ||||| || || || || || | ||||| Sbjct 534718 GATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTT 534777 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 534778 GCCAGTCAGCGTCTTCACGAAAATCTGCAT 534807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477193277770