Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq14 152 6e-32 seq2 107 2e-18 >seq14 Length=2944040 Score = 152 bits (168), Expect = 6e-32 Identities = 626/980 (64%), Gaps = 14/980 (1%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATTAG 47922 |||||| | || | || || || || | ||| ||||| || || || | || || | Sbjct 112966 ACAAACATGTTCAACGCAATCGAGGCCAAATTGCATACGGCCACTTCGTCCTTCGACGA- 112908 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 ||||| | ||| |||| || || ||| ||||||||||| || | ||||| || | Sbjct 112907 -ATATTCCACTATCTCAGTGCAAAGGTTAGAGCATTTGATAGTGCCAATGTTTTGCTGGT 112849 Query 47983 TATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 | | || || || |||||||| ||||| | ||| || ||||| | ||| | Sbjct 112848 TGCTTTTGCGATTGCACGCATCCTTGTACAGCATGTACGGTACGCCCGTTTCCACCTGTG 112789 Query 48043 ATTCAATGATAGATTTCCAAACAGTCCTA-GCCTTTA--TAACAGCTCTAGCTTTATTAT 48099 | || ||||| | ||| | | || | ||||| | | || | ||| | | Sbjct 112788 ACTCGATGATCGCAAACCACAGA-TCTTGCGCCTTCACTTGACGTATAAAGCG--ACCCT 112732 Query 48100 CATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAG 48159 | | |||||| || || | |||||| || || || || | || | | ||| | Sbjct 112731 CTTTCTCGTATCCCGTGTACAGCTTCTCGAACTCTTCGCCCCATGAATCGGCCAGCCCGG 112672 Query 48160 GACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATA 48219 |||| || | || |||||||| ||| |||| | || | |||| || | Sbjct 112671 GACAATCGTGGGGGCACATCAAACTCCACGTTTCATTCGCCTCCACACGCTTCATGAACA 112612 Query 48220 TATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTAT 48279 ||| |||||||| ||||| || | ||||| || | | || || ||||| | | Sbjct 112611 GATCCGGTATCCACAGAGCGTAGAACATATCCCGAGCACGAACCTCCTCCTTGCCGGTGT 112552 Query 48280 TCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCA 48339 | | || || || ||||| || | | |||| ||||||| ||||| | || || || | Sbjct 112551 TTTTCTTCAGATCCAGAAACTCAAACACATCACCATGCCACGGTTCGAGGTAGATAGCAA 112492 Query 48340 TTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC 48399 | ||||| || |||||||| || ||||| | || || || || ||||| || || | Sbjct 112491 ACGCGCCTGGGCGCTTATTACCGCCCTGATCAACGTACCTTGCCGTGTTGTTGTACACAC 112432 Query 48400 TTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAG 48459 || ||| || || | || || || ||||| || || || || || || |||| | | Sbjct 112431 GTAGCATCGGTACCAGCCCGTTCGAAATACCGTTCGTGCCGGAGATGTACGTTCCCTTCG 112372 Query 48460 CTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACA 48517 | | || | | | ||| | || |||||||| ||| ||| || || | || || Sbjct 112371 CACGGATGCAGTGCACATTCAGT--CCGATACCACCGGCCGATTTCGAGATCAATGCGCA 112314 Query 48518 CCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACA 48577 | || || ||||| || || ||||| || ||||| || ||| | | ||||| || Sbjct 112313 TTGCTTTAGAGTATCGTAGATACCTTCGATGCTATCGTCCGACATGGTCAGCAGAAAGCA 112254 Query 48578 ACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAA 48637 | ||| | || ||| | || | | ||| | || ||||| || || |||| Sbjct 112253 AGAAGAAAGCTGAGGACGCTGTGTGGCCGCCGCAAACATGGTCGGAGAAGCGTGGGTAAA 112194 Query 48638 CCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTAT 48697 | ||| || | || || || || || || | | || || ||| || || Sbjct 112193 GTAACGCTCCGAAAGCAGATTGTACGTCTCGATCGCTGCCTCAATGTCCTCGCCGTGGAT 112134 Query 48698 ACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTT 48757 || |||| |||||||| ||||||| ||| ||||| || ||||| || || || || Sbjct 112133 GCCAATAGCGACACGCATCAACATATGTTGCGGTCTCTCGACAATCTTTCCCTTGATCTT 112074 Query 48758 CAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817 ||| | ||| ||| |||| ||||||||||| ||||| ||||| |||||| ||| Sbjct 112073 CAACAAATACGATCGCTCCAGGGTTTTAAAACCGAAATAATTGTACCCAAAGTCACGATC 112014 Query 48818 ATTAATAATTGATGAATTTA 48837 | ||| || | ||||||| Sbjct 112013 GTAAATGATGGCCGAATTTA 111994 Score = 152 bits (168), Expect = 6e-32 Identities = 626/980 (64%), Gaps = 14/980 (1%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATTAG 47922 |||||| | || | || || || || | ||| ||||| || || || | || || | Sbjct 127677 ACAAACATGTTCAACGCAATCGAGGCCAAATTGCATACGGCCACTTCGTCCTTCGACGA- 127619 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 ||||| | ||| |||| || || ||| ||||||||||| || | ||||| || | Sbjct 127618 -ATATTCCACTATCTCAGTGCAAAGGTTAGAGCATTTGATAGTGCCAATGTTTTGCTGGT 127560 Query 47983 TATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 | | || || || |||||||| ||||| | ||| || ||||| | ||| | Sbjct 127559 TGCTTTTGCGATTGCACGCATCCTTGTACAGCATGTACGGTACGCCCGTTTCCACCTGTG 127500 Query 48043 ATTCAATGATAGATTTCCAAACAGTCCTA-GCCTTTA--TAACAGCTCTAGCTTTATTAT 48099 | || ||||| | ||| | | || | ||||| | | || | ||| | | Sbjct 127499 ACTCGATGATCGCAAACCACAGA-TCTTGCGCCTTCACTTGACGTATAAAGCG--ACCCT 127443 Query 48100 CATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAG 48159 | | |||||| || || | |||||| || || || || | || | | ||| | Sbjct 127442 CTTTCTCGTATCCCGTGTACAGCTTCTCGAACTCTTCGCCCCATGAATCGGCCAGCCCGG 127383 Query 48160 GACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATA 48219 |||| || | || |||||||| ||| |||| | || | |||| || | Sbjct 127382 GACAATCGTGGGGGCACATCAAACTCCACGTTTCATTCGCCTCCACACGCTTCATGAACA 127323 Query 48220 TATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTAT 48279 ||| |||||||| ||||| || | ||||| || | | || || ||||| | | Sbjct 127322 GATCCGGTATCCACAGAGCGTAGAACATATCCCGAGCACGAACCTCCTCCTTGCCGGTGT 127263 Query 48280 TCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCA 48339 | | || || || ||||| || | | |||| ||||||| ||||| | || || || | Sbjct 127262 TTTTCTTCAGATCCAGAAACTCAAACACATCACCATGCCACGGTTCGAGGTAGATAGCAA 127203 Query 48340 TTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC 48399 | ||||| || |||||||| || ||||| | || || || || ||||| || || | Sbjct 127202 ACGCGCCTGGGCGCTTATTACCGCCCTGATCAACGTACCTTGCCGTGTTGTTGTACACAC 127143 Query 48400 TTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAG 48459 || ||| || || | || || || ||||| || || || || || || |||| | | Sbjct 127142 GTAGCATCGGTACCAGCCCGTTCGAAATACCGTTCGTGCCGGAGATGTACGTTCCCTTCG 127083 Query 48460 CTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACA 48517 | | || | | | ||| | || |||||||| ||| ||| || || | || || Sbjct 127082 CACGGATGCAGTGCACATTCAGT--CCGATACCACCGGCCGATTTCGAGATCAATGCGCA 127025 Query 48518 CCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACA 48577 | || || ||||| || || ||||| || ||||| || ||| | | ||||| || Sbjct 127024 TTGCTTTAGAGTATCGTAGATACCTTCGATGCTATCGTCCGACATGGTCAGCAGAAAGCA 126965 Query 48578 ACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAA 48637 | ||| | || ||| | || | | ||| | || ||||| || || |||| Sbjct 126964 AGAAGAAAGCTGAGGACGCTGTGTGGCCGCCGCAAACATGGTCGGAGAAGCGTGGGTAAA 126905 Query 48638 CCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTAT 48697 | |||||| | || || || || || || | | || || ||| || || Sbjct 126904 GTAACGCTCTGAAAGCAGATTGTACGTCTCGATCGCTGCCTCAATGTCCTCGCCGTGGAT 126845 Query 48698 ACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTT 48757 || || | |||||||| ||||||| || ||||| || ||||| || || ||||| Sbjct 126844 GCCAATGGCGACACGCATCAACATATGCTGCGGTCTCTCGACAATCTTTCCCTTGATTTT 126785 Query 48758 CAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817 ||| | ||| ||| |||| ||||||||||| ||||| ||||| |||||| ||| Sbjct 126784 CAACAAATACGATCGCTCCAGAGTTTTAAAACCGAAATAATTGTACCCAAAGTCACGATC 126725 Query 48818 ATTAATAATTGATGAATTTA 48837 | ||| || | ||||||| Sbjct 126724 GTAAATGATGGCCGAATTTA 126705 >seq2 Length=22738934 Score = 107 bits (118), Expect = 2e-18 Identities = 351/543 (65%), Gaps = 2/543 (0%) Strand=Plus/Plus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 ||||||| || ||||| ||||| || ||||||||||| | |||| || || || Sbjct 19672025 AACATCAGGCAGGCAAAGTCACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAG 19672084 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || | || ||||| || || | || || | |||||| || | ||||| ||| Sbjct 19672085 AACGTCAGCCCCGGCATTAGGCCGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCA 19672144 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 |||||| || || || ||||| || || ||||| | | || ||| | | || | Sbjct 19672145 CTAAAGAAGATGCCCTCGACTGCAGCGAACGCAACCACACGCTCCCCAAAGTTGGCCTTC 19672204 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 || | ||||| ||||| ||||| || |||||||| ||||| || |||| || || Sbjct 19672205 TTGCTGGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCG 19672264 Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAA 19251 || | || || |||||| ||||| | | || | || | || |||| | Sbjct 19672265 ATCGCGTTGAACAGATACTCCCGCTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGC 19672324 Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCT 19311 ||||||||| || | || || || || |||||||| ||||| || || | || Sbjct 19672325 GAGTACATTTCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCC 19672384 Query 19312 TCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCA 19371 || || | ||| || || | || | || |||| ||| ||||| || || || || Sbjct 19672385 TCCGTCACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTTACGATACCGTCC 19672444 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA 19431 || || || || || | || || || ||||| || || | || | | Sbjct 19672445 GAGGCGGCGAAGAAGGCAAGCACGTGCGAGATGAAATGACGCTC-GCTTGGTTTGAGCGA 19672503 Query 19432 TT-CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTC 19490 || ||| || || || || || || | || || ||||| || ||||| || |||||||| Sbjct 19672504 TTCCCAGTCTTTCATGTCCTTCGACAGGTCCACCTCTTCCACCGTCCAGAAGGAAGCCTC 19672563 Query 19491 TGC 19493 || Sbjct 19672564 CGC 19672566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106621828400