Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4 125 6e-24 seq5 109 4e-19 >seq4 Length=15719670 Score = 125 bits (138), Expect = 6e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| || || || ||||| || | | ||| | | |||| |||| ||| Sbjct 15451501 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAGCTGC 15451442 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| |||||| ||||| || || || ||||| || || || || || Sbjct 15451441 TTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGGATCTTG 15451382 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | ||||| || | || || |||||||||| ||||||||||| Sbjct 15451381 GCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGAGTGATGGTTTTGCCGGTG 15451322 Query 101447 AAAGTTTTTACAAATATCTGCATGGTT 101473 | ||||| || || ||||||||| || Sbjct 15451321 AGTGTTTTCACGAAAATCTGCATGTTT 15451295 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || || || || ||||||||||||| | || | | |||| |||| || Sbjct 4750579 ATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCCTCCAGCTG 4750638 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | |||||| ||||| ||||| || || || || || || || || Sbjct 4750639 CTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGGATCTT 4750698 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| | || | || || || | || || ||||| || | || || || || Sbjct 4750699 TGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGT 4750758 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 4750759 GAGGGTTTTGACGAAGATCTGCAT 4750782 >seq5 Length=12895223 Score = 109 bits (120), Expect = 4e-19 Identities = 192/280 (69%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCC 13714 || ||||| || || || || | ||||||| || ||||| ||| | ||| |||||| Sbjct 6101013 AACTTTCGCTTGCAGCCGTCGTAGTTCATGTAGCGAATTTTGCCAAAAATTTCCCGCTCC 6100954 Query 13715 ATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGA 13774 |||| | |||| || | ||| || ||||||||||| ||| | || || || ||| Sbjct 6100953 TTCCATCCCTGATCATGGATGCCGGCGATCGACCACATGCACCCGACGTATCCATTCGGA 6100894 Query 13775 TCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTGTA 13834 ||||| ||||||| ||||| ||||||| ||| ||||| | | || | Sbjct 6100893 TCGCGCCCATCCAGGCTGTAGCGATCGTTGAGATAGATGGCCGTTTCGAGCGCTTCCTCG 6100834 Query 13835 GGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGCATT 13894 |||| | | ||| |||| |||||| || |||||||| || | || | | |||||||| Sbjct 6100833 GGCGTTTTCGTCCACTCTAGTATTTTCTTCGCCCAATACATGCGCAGAAACCCGTGCATC 6100774 Query 13895 TTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACA 13934 ||| | | | | ||||| ||| || |||||||||| Sbjct 6100773 TTGGCCTCCTTCACCAGCTGCAGCTGGGCCGCGTTCCACA 6100734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276902810670