Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 273 4e-68 seq14 221 2e-52 seq5 118 2e-21 >seq2 Length=22738934 Score = 273 bits (302), Expect = 4e-68 Identities = 484/705 (69%), Gaps = 3/705 (0%) Strand=Plus/Plus Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| ||||||| ||| |||| ||||| | ||||| || | ||||||||| | Sbjct 19671859 CAGCAACCGATCCGCCACGAACTCAATGTACTGCGACATCAGTTCGCAGTTCATGCCGAG 19671918 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 | | || |||| ||||| || || ||||||| ||| ||| || || || | | Sbjct 19671919 CATGTCGACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCACGACCGCATCGCGGAT 19671978 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 |||| | | ||||| || || ||||| | ||| | | | | | || ||| Sbjct 19671979 GATCTCCGTCACGCGCTCCTTCGACGGTTTCTGCACCAGATACCGGA---ACATCAGGCA 19672035 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | ||||| || ||||| || ||| ||| |||| ||||| || || Sbjct 19672036 GGCAAAGTCACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTCAGCCC 19672095 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | || || |||||||| || ||||| || |||| |||||||| Sbjct 19672096 CGGCATTAGGCCGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCACTAAAGAAGAT 19672155 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 |||||| ||||| |||||||| | | ||| || || || |||||| ||||| Sbjct 19672156 GCCCTCGACTGCAGCGAACGCAACCACACGCTCCCCAAAGTTGGCCTTCTTGCTGGAGAT 19672215 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 |||| ||||||||||| ||||||||||| | ||| |||| ||| || || || ||| Sbjct 19672216 CCAGTTCAGCGCCCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGAA 19672275 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 || | || | ||| | ||| | || || || |||| | |||||| || Sbjct 19672276 CAGATACTCCCGCTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATTTC 19672335 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 |||||| ||||| || || ||||| |||||||||||| | |||||| |||||| Sbjct 19672336 GCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTG 19672395 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||| || | ||| | ||||| |||||||||||| || || || || || || || || Sbjct 19672396 CACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTTACGATACCGTCCGAGGCGGCGAA 19672455 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 ||||||||| || || | |||||| |||||| | | |||| | | |||| | | Sbjct 19672456 GAAGGCAAGCACGTGCGAGATGAAATGACGCTCGCTTGGTTTGAGCGATTCCCAGTCTTT 19672515 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| || ||||||||| |||||||| ||||||||||| || Sbjct 19672516 CATGTCCTTCGACAGGTCCACCTCTTCCACCGTCCAGAAGGAAGC 19672560 >seq14 Length=2944040 Score = 221 bits (244), Expect = 2e-52 Identities = 878/1356 (65%), Gaps = 72/1356 (5%) Strand=Plus/Minus Query 212858 CATGTCCTCGTTCCAGAGGCC---CCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGAC 212914 ||| || |||| ||| || || | ||||| ||| ||||| ||| ||| |||| || Sbjct 113567 CATTTCATCGTCCCACAGACCGTGCGTGGTC---AGGTCCTTGATCAGATGATGGTTTAC 113511 Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 | ||| || || || || ||||| | | | ||| | ||| || ||||| || |||| Sbjct 113510 AACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTAGACGTTCGACGTGTACGGTTCGAA 113451 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 ||| ||||| ||||| || || ||||| ||||| ||||| || || | ||| || Sbjct 113450 CGACTCATTGTTGCCCAGTATTTGAGCAGTCGAAGCTGTTGGCATCGGTGCTAGCAGCAG 113391 Query 213035 ACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCC 213094 ||| | | ||||||| | || | | | | |||| | ||| Sbjct 113390 TGAGTTACGAATGCCGTGCTTTGCAATCTTTTCCTTCAACGCCACCCAATTCCA------ 113337 Query 213095 AGACAGGTCC-TCG--TCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCAC 213151 ||| ||| ||| ||||| |||||||||||| |||||| ||||| ||||| || Sbjct 113336 ---CAGATCCGTCGGTTCCTT---GTTCCACATGTCGTACTGCAGAATGCCCTTGCTTAC 113283 Query 213152 GGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTG 213211 || | || | ||| | ||| || |||| || ||||| |||||| || | Sbjct 113282 CGGACAACCTTCGTACGTCTCGTACGGCCCATCCTTGGCGGCCAATTCGCAGCTAGCTTC 113223 Query 213212 CAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGC-------CT 213264 ||| || | |||||||||||||||||||| | | || ||||||| || || Sbjct 113222 CAGCGCTCCATAGTAGATGGTTTCAAATATTTGCTGATTAAGCTTCTGCGCTTGCTCACT 113163 Query 213265 CTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 || | ||| ||| ||||| || |||| |||| |||| |||||||| |||| Sbjct 113162 CT-CGTACGGAAAGCCCATCAAAAT------GAACGCATCGGCCATACCCTGGACACCGA 113110 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCCAAGGGGTAAAAGT 213381 ||||||| || | ||| | || ||| || ||| | ||| || ||||| ||| Sbjct 113109 TGCCGATCGGACGGTGGCGCATGTTCGAGCGCTTCG---CTTCCGGCACCGGGTAGTAGT 113053 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 | ||| ||||||||||| || ||||| || | | |||| ||| | ||| | || Sbjct 113052 TCACGTCAATGATCTTGTTAAGATTGCGTGTCACGATCTTGGCGACCTCCTTCAGCTTCT 112993 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGT 213501 || || | ||||| | || |||||||||| || || || ||||| | Sbjct 112992 CGAAATCG--TACGTA-CGATCGGGCTGCACAAACATGTTCAACGCAATCGAGGCCAAAT 112936 Query 213502 TGCAAACGGCCA---CCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGC 213558 |||| ||||||| | |||| || | || |||| ||||| ||||| ||||| Sbjct 112935 TGCATACGGCCACTTCGTCCTTCGA---CGAATATTCCACTATCTCAGTGCAAAGGTTAG 112879 Query 213559 TGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAG 213617 |||| ||| ||||| | ||| || ||| ||| |||||| | ||| | ||||||||| Sbjct 112878 AGCATTTGATAGTGCCAATGTTTTGCTGG-TTGCTTTTGCGATTGCACGCATCCTTGTAC 112820 Query 213618 AGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTG 213677 |||||||| || || || || | ||| ||| | | ||| ||| || | | || Sbjct 112819 AGCATGTACGGTACGCCCGTTTCCACCTGTGACTCGATGATCGCAAACCACAGAT-CTTG 112761 Query 213678 -GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA--CTGTTCGTAGAGCTCG 213734 ||||| || || | | ||| | | | |||||| | || ||| |||| Sbjct 112760 CGCCTTCACTTGACGTAT-AAAGCGACCCTCTT--TCTCGTATCCCGT--GTACAGCTTC 112706 Query 213735 TTGAATTCGTGGCCCCA-GACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCT 213793 | ||| || | |||||| || | | |||| || ||||| ||| ||||| | || Sbjct 112705 TCGAACTCTTCGCCCCATGAATC-GGCCAGCCCGGGACAATCGTGGGGGCACATCAAACT 112647 Query 213794 CCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852 ||| || | || ||| || | || ||||||||| ||||| | |||||| ||| || Sbjct 112646 CCACGTTTCATTCGCCTC-CACACGCTTCATGAACAGATCCGGTATCCACAGAGCGTAGA 112588 Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912 ||| |||| | | ||| ||| || | |||||| |||||| ||||| |||| Sbjct 112587 ACATATCCCGAGCACGAACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCAA 112528 Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGC 213969 | | || | |||||||| || | |||||| ||||| ||||| | || | || |||| Sbjct 112527 ACACATCACCATGCCACGGTTCGAGGTAGATAGCAAACGCGCCTGGGCGCTTATTACCGC 112468 Query 213970 CCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGG 214029 |||| || || ||| ||| ||||| | | || || | |||||||||||||| | Sbjct 112467 CCTGATCAACGTACCTTGCCGTGTTGTTGTACACACGTAGCATCGGTACCAGCCCGTTCG 112408 Query 214030 ACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGG--TTGCTCATGGAGAG 214087 | ||||| || || | || |||| || || | | | ||| ||| || Sbjct 112407 AAATACCGTTCGTGCCGGAGATGTACGTTCCCTTCGCACGGATGCAGTGCACAT--TCAG 112350 Query 214088 CCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCC 214147 || || |||||||| | || ||||||| ||||| || | | ||| || ||| || Sbjct 112349 TCCGATACCACCGGCCGATTTCGAGATCAATGCGCATTGCTTTAGAGTATCGTAGATACC 112290 Query 214148 GGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCA 214183 | ||||| || || | | | |||||| ||||| Sbjct 112289 TTCGATGCTATCGTCCGACATGGTCAGCAGAAAGCA 112254 Score = 221 bits (244), Expect = 2e-52 Identities = 878/1356 (65%), Gaps = 72/1356 (5%) Strand=Plus/Minus Query 212858 CATGTCCTCGTTCCAGAGGCC---CCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGAC 212914 ||| || |||| ||| || || | ||||| ||| ||||| ||| ||| |||| || Sbjct 128278 CATTTCATCGTCCCACAGACCGTGCGTGGTC---AGGTCCTTGATCAGATGATGGTTTAC 128222 Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 | ||| || || || || ||||| | | | ||| | ||| || ||||| || |||| Sbjct 128221 AACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTAGACGTTCGACGTGTACGGTTCGAA 128162 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 ||| ||||| ||||| || || ||||| ||||| ||||| || || | ||| || Sbjct 128161 CGACTCATTGTTGCCCAGTATTTGAGCAGTCGAAGCTGTTGGCATCGGTGCTAGCAGCAG 128102 Query 213035 ACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCC 213094 ||| | | ||||||| | || | | | | |||| | ||| Sbjct 128101 TGAGTTACGAATGCCGTGCTTTGCAATCTTTTCCTTCAACGCCACCCAATTCCA------ 128048 Query 213095 AGACAGGTCC-TCG--TCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCAC 213151 ||| ||| ||| ||||| |||||||||||| |||||| ||||| ||||| || Sbjct 128047 ---CAGATCCGTCGGTTCCTT---GTTCCACATGTCGTACTGCAGAATGCCCTTGCTTAC 127994 Query 213152 GGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTG 213211 || | || | ||| | ||| || |||| || ||||| |||||| || | Sbjct 127993 CGGACAACCTTCGTACGTCTCGTACGGCCCATCCTTGGCGGCCAATTCGCAGCTAGCTTC 127934 Query 213212 CAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGC-------CT 213264 ||| || | |||||||||||||||||||| | | || ||||||| || || Sbjct 127933 CAGCGCTCCATAGTAGATGGTTTCAAATATTTGCTGATTAAGCTTCTGCGCTTGCTCACT 127874 Query 213265 CTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 || | ||| ||| ||||| || |||| |||| |||| |||||||| |||| Sbjct 127873 CT-CGTACGGAAAGCCCATCAAAAT------GAACGCATCGGCCATACCCTGGACACCGA 127821 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCCAAGGGGTAAAAGT 213381 ||||||| || | ||| | || ||| || ||| | ||| || ||||| ||| Sbjct 127820 TGCCGATCGGACGGTGGCGCATGTTCGAGCGCTTCG---CTTCCGGCACCGGGTAGTAGT 127764 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 | ||| ||||||||||| || ||||| || | | |||| ||| | ||| | || Sbjct 127763 TCACGTCAATGATCTTGTTAAGATTGCGTGTCACGATCTTGGCGACCTCCTTCAGCTTCT 127704 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGT 213501 || || | ||||| | || |||||||||| || || || ||||| | Sbjct 127703 CGAAATCG--TACGTA-CGATCGGGCTGCACAAACATGTTCAACGCAATCGAGGCCAAAT 127647 Query 213502 TGCAAACGGCCA---CCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGC 213558 |||| ||||||| | |||| || | || |||| ||||| ||||| ||||| Sbjct 127646 TGCATACGGCCACTTCGTCCTTCGA---CGAATATTCCACTATCTCAGTGCAAAGGTTAG 127590 Query 213559 TGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAG 213617 |||| ||| ||||| | ||| || ||| ||| |||||| | ||| | ||||||||| Sbjct 127589 AGCATTTGATAGTGCCAATGTTTTGCTGG-TTGCTTTTGCGATTGCACGCATCCTTGTAC 127531 Query 213618 AGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTG 213677 |||||||| || || || || | ||| ||| | | ||| ||| || | | || Sbjct 127530 AGCATGTACGGTACGCCCGTTTCCACCTGTGACTCGATGATCGCAAACCACAGAT-CTTG 127472 Query 213678 -GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA--CTGTTCGTAGAGCTCG 213734 ||||| || || | | ||| | | | |||||| | || ||| |||| Sbjct 127471 CGCCTTCACTTGACGTAT-AAAGCGACCCTCTT--TCTCGTATCCCGT--GTACAGCTTC 127417 Query 213735 TTGAATTCGTGGCCCCA-GACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCT 213793 | ||| || | |||||| || | | |||| || ||||| ||| ||||| | || Sbjct 127416 TCGAACTCTTCGCCCCATGAATC-GGCCAGCCCGGGACAATCGTGGGGGCACATCAAACT 127358 Query 213794 CCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852 ||| || | || ||| || | || ||||||||| ||||| | |||||| ||| || Sbjct 127357 CCACGTTTCATTCGCCTC-CACACGCTTCATGAACAGATCCGGTATCCACAGAGCGTAGA 127299 Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912 ||| |||| | | ||| ||| || | |||||| |||||| ||||| |||| Sbjct 127298 ACATATCCCGAGCACGAACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCAA 127239 Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGC 213969 | | || | |||||||| || | |||||| ||||| ||||| | || | || |||| Sbjct 127238 ACACATCACCATGCCACGGTTCGAGGTAGATAGCAAACGCGCCTGGGCGCTTATTACCGC 127179 Query 213970 CCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGG 214029 |||| || || ||| ||| ||||| | | || || | |||||||||||||| | Sbjct 127178 CCTGATCAACGTACCTTGCCGTGTTGTTGTACACACGTAGCATCGGTACCAGCCCGTTCG 127119 Query 214030 ACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGG--TTGCTCATGGAGAG 214087 | ||||| || || | || |||| || || | | | ||| ||| || Sbjct 127118 AAATACCGTTCGTGCCGGAGATGTACGTTCCCTTCGCACGGATGCAGTGCACAT--TCAG 127061 Query 214088 CCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCC 214147 || || |||||||| | || ||||||| ||||| || | | ||| || ||| || Sbjct 127060 TCCGATACCACCGGCCGATTTCGAGATCAATGCGCATTGCTTTAGAGTATCGTAGATACC 127001 Query 214148 GGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCA 214183 | ||||| || || | | | |||||| ||||| Sbjct 127000 TTCGATGCTATCGTCCGACATGGTCAGCAGAAAGCA 126965 >seq5 Length=12895223 Score = 118 bits (130), Expect = 2e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| || ||||||||| || ||| ||||| || || ||||| ||||| Sbjct 1211456 CTTTAGCTCCTTCACCTTGTCCTCCAGCTTCGAGATCCGTTCGAGCTTCCGCCGCCGGCA 1211515 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| |||| ||||| || || | ||| ||||| ||||||||| |||||| Sbjct 1211516 CTTGGAGGCGGCCACCCGGTTTCGTAGCCGCTTCCGTTCGAGCTTGATGCGCTCCTGGGA 1211575 Query 241609 CTCCATGTCGATCGG 241623 ||||||||||||||| Sbjct 1211576 CTCCATGTCGATCGG 1211590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529190310400