Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 100 8e-16 seq10 95.1 4e-14 >seq3 Length=16089237 Score = 100 bits (110), Expect = 8e-16 Identities = 184/266 (69%), Gaps = 3/266 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 ||||| |||||| | ||||||||| || ||||| ||| | || || || || ||| Sbjct 91900 TCCATCGCCTTGATCAGACGACGCTGGATGTAACCGGTTTCGGCCGTCTTGACGGCGGTA 91841 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || | ||| | || |||||||| || |||||| | | ||| ||| ||| || || Sbjct 91840 TCGATCAAACCCTCGCGGCCACCCATCGCGTGGAAGTAGAACTCGGTCGG-CGTCAGACC 91782 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | ||| | || ||||| ||||||| |||||| | |||| |||| | || Sbjct 91781 GGCCAGGTACGAGTTTTCCACGAACCCACGCGACTCGGGACCGTAGTCGTCCTTGATGAA 91722 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 || |||||||| | || | ||| | ||||| ||||| || || ||||||||||| Sbjct 91721 ATGGGGCAGGGTGCGCTTACGGAACCCGAACGGGATGCGCTTACCCTCCACGTTCTGCTG 91662 Query 302814 TCCCAGGCACGAAATCATCTG-CGAA 302838 || | || | ||| | ||| |||| Sbjct 91661 ACCGACACAAGCAATAACCTGTCGAA 91636 >seq10 Length=6084899 Score = 95.1 bits (104), Expect = 4e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| |||||| ||| ||||||||||| || |||||||| | |||||| || || Sbjct 3839169 GCACCGTGCGAAATCTGACAGTCACGCTCCATCTCGCCGAAACGCAAACCACCGTCACGC 3839228 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | |||||| ||||| || |||| | || |||||| | || ||| Sbjct 3839229 GCACGACCCTCCATCGGCTGGCGTACGAGAATCTGCACGGGACCGCGAGCACGCGAATGG 3839288 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 |||||| | ||||| ||||| |||||||||||| | | ||| |||| |||| Sbjct 3839289 ATCTTATCGTCCACCATGTGCTTCAGACGCTGGTAGTAGGTGGGCCCGAGAAAGA 3839343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471811754124470