Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-23 seq6 87.8 2e-11 >seq2 Length=22738934 Score = 127 bits (140), Expect = 2e-23 Identities = 199/281 (71%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||||| ||||| || | || || ||||| |||||||||||| Sbjct 19672055 CCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTCAGCCCCGGCATTAGGCCGCGCTTC 19672114 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || ||||| ||||||| |||| || ||||| || |||||||||||||| || || || Sbjct 19672115 TTCAGCCAGAAGATGGCCGCA-AAGCTGCCACTAAAGAAGATGCCCTCGACTGCAGCGAA 19672173 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCT--TGTTGATCCACTTCATCGCC 869356 | | | ||||| ||||| | |||| || | || |||||| |||| |||| Sbjct 19672174 CGCAACCACACGCTCCCCAAAGTT-----GGCCTTCTTGCTGGAGATCCAGTTCAGCGCC 19672228 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||||||||| ||| | || |||||| ||| ||||| ||| || || | ||| Sbjct 19672229 CAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGAACAGATACTCCCGC 19672288 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 || |||||| | || ||||||||||| ||||| || Sbjct 19672289 TCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTA 19672329 Score = 95.1 bits (104), Expect = 1e-13 Identities = 203/297 (68%), Gaps = 6/297 (2%) Strand=Plus/Plus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCT-CTTGG 1573953 |||||| || || ||| || || |||| ||| |||||||| || |||| ||||| Sbjct 2294689 GGGTCCACCGGGAGTGGGTAAAACTACGACTATCCTTTGTCTGGCCCGCATCCTGCTTGG 2294748 Query 1573954 GCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACG 1574013 | |||| ||||||||||| || || || || || ||||||| || |||| | Sbjct 2294749 TCCGAATTTCCGA-GAGGCCGTGCTTGAGCTGAATGCCTCAAACGAGCGTGGTATCGATG 2294807 Query 1574014 TCGTGCGCAAGATCATCAAGCACCACG-CCTCCAAGAGG-ATCGACCTGCCGCCCGGACG 1574071 | || || | | |||||| | || ||| ||| | || ||||| | ||| || Sbjct 2294808 TGGTACGTAGTAAGATCAAGATGTTTGCCCAGCAAAAGGTAACG--CTGCCACGCGGGCG 2294865 Query 1574072 CCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCT 1574131 |||||| | | || || || ||||| ||| || | ||| | || |||||||| || Sbjct 2294866 TCACAAGATCGTGATTCTTGATGAGGCGGACAGCATGACGGAAGGTGCTCAGCAGGCGCT 2294925 Query 1574132 GCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACAC 1574188 || |||||||||| ||| |||||| || |||||||| |||| |||||||| Sbjct 2294926 ACGCCGGACCATGGAAATCTACAGCAACACAACCCGCTTTGCGTTGGCATGCAACAC 2294982 Score = 86.0 bits (94), Expect = 8e-11 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||| | |||||| || || ||||| || ||||| ||| | |||| | ||| || || Sbjct 19672339 GTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTGCAC 19672398 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||||| |||| || | |||| ||||| ||||| ||||| ||||||||| || Sbjct 19672399 CTCCTGGCTGAAGCGCTCCACCAGATTCTCATTTACGATACCGTCCGAGGCGGCGAAGAA 19672458 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT-GAGCGACACCCAGTGGACGG 869813 || || |||||| ||| || || |||||| | | | | |||||| |||||| Sbjct 19672459 GGCAAGCACGTGCGAGATGAAATGACGCTCG-CTTGGTTTGAGCGATTCCCAGTCTTTCA 19672517 Query 869814 TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 |||| ||||||||||| || | ||||||| || ||||| |||| Sbjct 19672518 TGTCCTTCGACAGGTCCACCTCTTCCACCGTCCAGAAGGAAGCCTCCGCCT 19672568 >seq6 Length=12084465 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || || ||||| ||||| || || || | || Sbjct 5211202 GCTTGGCCAGCTCACCCGGCAGCAGCAACCGGACGGCCGTCTGAATTTCCCGGGACGTGA 5211143 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| ||| ||||| |||| |||| ||| || || | | || || |||| | Sbjct 5211142 TCGTGGAGCGTTTGTTGTAGTGAGCCAAGCGGGACGCTTCCGCCGCAATCCGCTCGAAGA 5211083 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | || ||||| || |||||||| ||| | ||| |||||||| ||| |||| Sbjct 5211082 TATCATTGACGAAGCTGTTCATGATGCTCATGGCTTTGGACGAGATGCCGGTGTCCGGGT 5211023 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 5211022 GGACCTGCTTCAGCACCTTGTAGATG 5210997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107113759948270