Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17]
310 sequences; 183,103,254 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2 127 2e-23
seq6 87.8 2e-11
>seq2
Length=22738934
Score = 127 bits (140), Expect = 2e-23
Identities = 199/281 (71%), Gaps = 9/281 (3%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| |||||||| ||||| ||||| || | || || ||||| ||||||||||||
Sbjct 19672055 CCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTCAGCCCCGGCATTAGGCCGCGCTTC 19672114
Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
|| ||||| ||||||| |||| || ||||| || |||||||||||||| || || ||
Sbjct 19672115 TTCAGCCAGAAGATGGCCGCA-AAGCTGCCACTAAAGAAGATGCCCTCGACTGCAGCGAA 19672173
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCT--TGTTGATCCACTTCATCGCC 869356
| | | ||||| ||||| | |||| || | || |||||| |||| ||||
Sbjct 19672174 CGCAACCACACGCTCCCCAAAGTT-----GGCCTTCTTGCTGGAGATCCAGTTCAGCGCC 19672228
Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416
||||||||||| ||| | || |||||| ||| ||||| ||| || || | |||
Sbjct 19672229 CAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGAACAGATACTCCCGC 19672288
Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457
|| |||||| | || ||||||||||| ||||| ||
Sbjct 19672289 TCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTA 19672329
Score = 95.1 bits (104), Expect = 1e-13
Identities = 203/297 (68%), Gaps = 6/297 (2%)
Strand=Plus/Plus
Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCT-CTTGG 1573953
|||||| || || ||| || || |||| ||| |||||||| || |||| |||||
Sbjct 2294689 GGGTCCACCGGGAGTGGGTAAAACTACGACTATCCTTTGTCTGGCCCGCATCCTGCTTGG 2294748
Query 1573954 GCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACG 1574013
| |||| ||||||||||| || || || || || ||||||| || |||| |
Sbjct 2294749 TCCGAATTTCCGA-GAGGCCGTGCTTGAGCTGAATGCCTCAAACGAGCGTGGTATCGATG 2294807
Query 1574014 TCGTGCGCAAGATCATCAAGCACCACG-CCTCCAAGAGG-ATCGACCTGCCGCCCGGACG 1574071
| || || | | |||||| | || ||| ||| | || ||||| | ||| ||
Sbjct 2294808 TGGTACGTAGTAAGATCAAGATGTTTGCCCAGCAAAAGGTAACG--CTGCCACGCGGGCG 2294865
Query 1574072 CCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCT 1574131
|||||| | | || || || ||||| ||| || | ||| | || |||||||| ||
Sbjct 2294866 TCACAAGATCGTGATTCTTGATGAGGCGGACAGCATGACGGAAGGTGCTCAGCAGGCGCT 2294925
Query 1574132 GCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACAC 1574188
|| |||||||||| ||| |||||| || |||||||| |||| ||||||||
Sbjct 2294926 ACGCCGGACCATGGAAATCTACAGCAACACAACCCGCTTTGCGTTGGCATGCAACAC 2294982
Score = 86.0 bits (94), Expect = 8e-11
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694
||| | |||||| || || ||||| || ||||| ||| | |||| | ||| || ||
Sbjct 19672339 GTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTGCAC 19672398
Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754
||||| |||| || | |||| ||||| ||||| ||||| ||||||||| ||
Sbjct 19672399 CTCCTGGCTGAAGCGCTCCACCAGATTCTCATTTACGATACCGTCCGAGGCGGCGAAGAA 19672458
Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT-GAGCGACACCCAGTGGACGG 869813
|| || |||||| ||| || || |||||| | | | | |||||| ||||||
Sbjct 19672459 GGCAAGCACGTGCGAGATGAAATGACGCTCG-CTTGGTTTGAGCGATTCCCAGTCTTTCA 19672517
Query 869814 TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864
|||| ||||||||||| || | ||||||| || ||||| ||||
Sbjct 19672518 TGTCCTTCGACAGGTCCACCTCTTCCACCGTCCAGAAGGAAGCCTCCGCCT 19672568
>seq6
Length=12084465
Score = 87.8 bits (96), Expect = 2e-11
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || ||| | || || ||||| ||||| || || || | ||
Sbjct 5211202 GCTTGGCCAGCTCACCCGGCAGCAGCAACCGGACGGCCGTCTGAATTTCCCGGGACGTGA 5211143
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
||||| ||| ||||| |||| |||| ||| || || | | || || |||| |
Sbjct 5211142 TCGTGGAGCGTTTGTTGTAGTGAGCCAAGCGGGACGCTTCCGCCGCAATCCGCTCGAAGA 5211083
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
| || ||||| || |||||||| ||| | ||| |||||||| ||| ||||
Sbjct 5211082 TATCATTGACGAAGCTGTTCATGATGCTCATGGCTTTGGACGAGATGCCGGTGTCCGGGT 5211023
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
| |||||||| |||||||||||||||
Sbjct 5211022 GGACCTGCTTCAGCACCTTGTAGATG 5210997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107113759948270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |