Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 136 6e-26 seq6 132 8e-25 seq14 89.7 8e-12 seq10 89.7 8e-12 >seq2 Length=22738934 Score = 136 bits (150), Expect = 6e-26 Identities = 229/329 (70%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||||| ||||| || || || ||||| |||||||||||| Sbjct 19672055 CCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTCAGCCCCGGCATTAGGCCGCGCTTC 19672114 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| |||||||| || ||||| || |||||||||||||| || || || Sbjct 19672115 TTCAGCCAGAAGATGGCCGCAAAGCTGCCACTAAAGAAGATGCCCTCGACTGCAGCGAAC 19672174 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCC 794518 | || | ||||| | ||||| |||| |||| || |||||| |||| ||||| Sbjct 19672175 GCAACCACACGCTC-CCCAAAGT----TGGCCTTCTTGCTGGAGATCCAGTTCAGCGCCC 19672229 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || ||||| ||| | || | |||| ||| ||||| ||| || || | ||| || Sbjct 19672230 AGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGAACAGATACTCCCGCT 19672289 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | |||||| | ||| |||||||| || |||||||| | || ||| | ||| | Sbjct 19672290 CCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATTTCGCTGTGCACGTTCT 19672349 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | || || ||||| || || || |||||| Sbjct 19672350 CCATCGCAATCTGAAACCCGTAGAAGCAG 19672378 Score = 114 bits (126), Expect = 2e-19 Identities = 164/228 (72%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 2019100 CCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTA 2019159 |||| ||||||||||| || || ||||| ||| ||||||| || | || || || |||| Sbjct 2294758 CCGA-GAGGCCGTGCTTGAGCTGAATGCCTCAAACGAGCGTGGTATCGATGTGGTACGTA 2294816 Query 2019160 GAATCATCAAGCA--TCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGT 2019217 | | |||||| | | | | ||| | | || ||||| | ||| || |||||| | Sbjct 2294817 GTAAGATCAAGATGTTTGCCCAGCAAAAGGTAACG--CTGCCACGCGGGCGTCACAAGAT 2294874 Query 2019218 GATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGAC 2019277 | || || |||||||| ||| || | ||| | || |||||||| || || ||| Sbjct 2294875 CGTGATTCTTGATGAGGCGGACAGCATGACGGAAGGTGCTCAGCAGGCGCTACGCCGGAC 2294934 Query 2019278 CATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACAC 2019325 |||||||| |||| |||||| || || |||||| |||| |||||||| Sbjct 2294935 CATGGAAATCTACAGCAACACAACCCGCTTTGCGTTGGCATGCAACAC 2294982 >seq6 Length=12084465 Score = 132 bits (146), Expect = 8e-25 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || ||||| ||||| ||||| || ||||||||| ||||||| || || ||| Sbjct 5211241 TGTACTTCGTCACGGCTTTGGTTCCCTCGGACACGGCGTGCTTGGCCAGCTCACCCGGCA 5211182 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| ||||| || || |||| ||||||| ||| ||||| | Sbjct 5211181 GCAGCAACCGGACGGCCGTCTGAATTTCCCGGGACGTGATCGTGGAGCGTTTGTTGTAGT 5211122 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| |||| || || | | || || |||| || || ||||| || ||||| Sbjct 5211121 GAGCCAAGCGGGACGCTTCCGCCGCAATCCGCTCGAAGATATCATTGACGAAGCTGTTCA 5211062 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||||| ||| ||||| |||||||| |||||||||| Sbjct 5211061 TGATGCTCATGGCTTTGGACGAGATGCCGGTGTCCGGGTGGACCTGCTTCAGCACCTTGT 5211002 Query 1485710 A 1485710 | Sbjct 5211001 A 5211001 >seq14 Length=2944040 Score = 89.7 bits (98), Expect = 8e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 2070106 CTCTCCCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCC 2070165 ||||| |||| | | |||||| ||||| ||||||| ||||| || |||| ||| Sbjct 113164 CTCTCGTACGGAAAGCCCATCAAAATGAACGCATCGGCCATACCCTGGACACCGATGCCG 113105 Query 2070166 ATCGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCG 2070225 ||||| |||||||||| ||||||| || || || ||||||||||||| ||| | ||| Sbjct 113104 ATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAGTAGTTCACGTCA 113045 Query 2070226 AT 2070227 || Sbjct 113044 AT 113043 Score = 89.7 bits (98), Expect = 8e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 2070106 CTCTCCCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCC 2070165 ||||| |||| | | |||||| ||||| ||||||| ||||| || |||| ||| Sbjct 127875 CTCTCGTACGGAAAGCCCATCAAAATGAACGCATCGGCCATACCCTGGACACCGATGCCG 127816 Query 2070166 ATCGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCG 2070225 ||||| |||||||||| ||||||| || || || ||||||||||||| ||| | ||| Sbjct 127815 ATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAGTAGTTCACGTCA 127756 Query 2070226 AT 2070227 || Sbjct 127755 AT 127754 >seq10 Length=6084899 Score = 89.7 bits (98), Expect = 8e-12 Identities = 130/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 653657 GGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTG-GGCAGCGTGCGCTCGAC 653715 |||||||| | | || ||||||||||| ||||| || ||| || | | | | Sbjct 3839671 GGCGACAAGTTCGCATCACGCCACGGGCAGAAGGGTAC-GTGCGGGATTCAGTACCGGCA 3839613 Query 653716 CGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCA 653775 ||||| ||||||| || | | ||| || ||||||||||||| ||||||||||||| Sbjct 3839612 GGAGGATATGCCGT--TCAC-GTGCGAAGGTATCACGCCCGACATCATCATCAACCCGCA 3839556 Query 653776 CGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTGG 653834 |||||| ||||| || |||||||| ||| | |||| ||| | | | ||| ||| ||| Sbjct 3839555 CGCCATTCCGTCCCGTATGACCATCGGCCATTTGATCGAGTGCATTCAGGGGAAGCTGG 3839497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916213423886090