Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4 138 7e-28 seq9 129 4e-25 seq1 105 4e-18 >seq4 Length=15719670 Score = 138 bits (152), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||||||||| || || || || || || |||| |||| Sbjct 4750571 AGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCC 4750630 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||||||||| || || ||||| || |||| | ||||||||||| Sbjct 4750631 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCC 4750690 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| || || || || |||| || || |||||| |||| ||| |||| Sbjct 4750691 TGGATCTTTGCCTTCAC--ATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGG 4750748 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||||||||||| || || ||||||||||| Sbjct 4750749 TCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 4750782 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| |||| |||||||| ||||| |||||||| || |||| |||| Sbjct 15451510 AGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCC 15451451 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || ||||| || | || | || |||||||| Sbjct 15451450 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCC 15451391 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | | |||| || || |||||| |||| || ||||| Sbjct 15451390 TGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGAGTGATGGTT 15451331 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||| || || || || ||||||||| Sbjct 15451330 TTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 15451298 >seq9 Length=6651167 Score = 129 bits (142), Expect = 4e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| ||||| ||||| || || |||| | || Sbjct 534999 AGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 535058 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || ||||| ||| |||| | ||||| ||||| Sbjct 535059 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCTTTGTCC 535118 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCG-ATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | |||| || | ||| |||||| || | || ||||| Sbjct 535119 TGGATCTTGGCCTTGACGTTCTCGATCGTATCCGATGG-CTCGACCTCCAGAGTGATGGT 535177 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || || ||||| || ||||||||||| Sbjct 535178 CTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 535210 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| || | | || || |||| ||| | ||| ||||||||| ||||| ||||| Sbjct 534578 TTTCCACCGCGAAGCCGAAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 534637 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || || |||| | || ||||| ||||| |||||||||||||| || ||||| ||| || Sbjct 534638 GACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGC 534697 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | ||||||||||| | || || |||||| | |||| || | |||| Sbjct 534698 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCG 534757 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | || |||||||| || || || ||||| || || ||||||||| Sbjct 534758 ACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAAATCTGCATG 534808 >seq1 Length=30017264 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| || || ||||| || ||| | || |||| Sbjct 15159565 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCT 15159624 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||||||||||||||| || ||||| || | || | || ||||| || Sbjct 15159625 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCC 15159684 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | ||| || || | || |||||| Sbjct 15159685 TGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTC 15159744 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||| || ||||| |||||| Sbjct 15159745 TTTCCGGTCAGAGTCTTGACGAAGATTTGCATG 15159777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691569491890