Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17]
310 sequences; 183,103,254 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq4 114 1e-20
seq9 87.8 1e-12
>seq4
Length=15719670
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||||| ||||| |||||||| || || ||||| || |||| | ||||| |
Sbjct 15451513 CGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCA 15451454
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || || ||||| || | |||| | ||||||||||| || || || || |||
Sbjct 15451453 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCCTTCCTTG 15451394
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || || ||| |||| | ||||| || | || || |||||||| ||
Sbjct 15451393 TCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGAGTGATG 15451334
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|||||||| || | ||||| || || |||||||| ||
Sbjct 15451333 GTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 15451296
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||||| |||||| || || || || || || || ||||| | | ||||| |
Sbjct 4750568 CGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCA 4750627
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || || ||||| || | || | | |||||||||||||| |||||||| |||
Sbjct 4750628 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTG 4750687
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | ||| || ||| | || | || || || | || || ||||| || ||
Sbjct 4750688 TCCTGGATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 4750747
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACGTATG 29799
|| || || || | |||||| || || |||||||| || || ||| ||
Sbjct 4750748 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAACCGTCTG 4750795
>seq9
Length=6651167
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| | || ||| || ||||| || | || || || || || ||||| || || |
Sbjct 534984 CCTCCTCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 535043
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| || || || || ||||| || | |||| | |||||||| |||||
Sbjct 535044 AGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 535103
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||||||||| || | || ||||| | || | || || || | || ||
Sbjct 535104 ATTCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGATGGCTCGACC 535163
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTA 29790
|| ||||| || || |||||||| | || || || || ||||||||| ||
Sbjct 535164 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATTCTA 535214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385217744593710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |