Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 3e-14 seq4 87.8 1e-12 seq1 86.0 4e-12 >seq9 Length=6651167 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| || ||| | ||||| || | || ||| || || |||||||| ||||| Sbjct 534984 CCTCCTCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 535043 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| |||| || || ||||| || |||| ||||||||||||| |||| Sbjct 535044 AGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 535103 Query 33643 ACACCTTCTTTGTC 33656 | || |||||||| Sbjct 535104 ATTCCCTCTTTGTC 535117 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||| || || |||||||| ||||| || |||||| |||| ||| Sbjct 534599 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 534658 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 | || || ||||| || |||| ||||||||||||| |||| | || || ||||| Sbjct 534659 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTC 534714 >seq4 Length=15719670 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || || | ||||| ||| || || ||| || || || |||||||||| Sbjct 4750554 CACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGG 4750613 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| || || ||||| || || | |||||||||||| ||| Sbjct 4750614 ACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCG 4750673 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||| || ||||| || || || | |||| || | || || | || Sbjct 4750674 GGATACCCTCCTTGTCCTGGATCTT-TGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 4750732 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || || ||||| || | ||||| || ||||||||||| Sbjct 4750733 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 4750782 >seq1 Length=30017264 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||| || |||||| ||| || || || ||||| || || Sbjct 15159550 CCTCCACGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAC 15159609 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || |||||||| || |||| |||||||||||| | || Sbjct 15159610 AGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGG 15159669 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||| || ||| || | || | |||||| || ||||| Sbjct 15159670 ATGCCTTCCTTATCCTGAATCTTAGCCTTC-ACGTTCTCGATGGTGTCCGATGGCTCCAC 15159728 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 || | |||||| || || || || | || || || ||||| ||||| |||| Sbjct 15159729 CTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT-GTTG 15159780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702758115200