Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 107 5e-18 seq1 104 6e-17 seq9 93.3 1e-13 >seq4 Length=15719670 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| |||||| | || || || || ||||| ||||| Sbjct 15451314 AAAACACTCACCGGCAAAACCATCACTCTTGAGGTCGAGCCCTCGGACACGATCGAAAAT 15451373 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || |||||||| ||||| || | || |||||| Sbjct 15451374 GTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCGGATCAGCAGCGTCTGATCTTC 15451433 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| || | || |||||| ||||||| || || Sbjct 15451434 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAACATCCAGAAGGAATCC 15451493 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 15451494 ACCCTTCACCTGGT 15451507 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || || || || || | || || || || || Sbjct 4750779 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 4750720 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||| || || || || || || |||||| || Sbjct 4750719 ACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCGCCGGATCAGCAG 4750660 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || || |||||||||| || Sbjct 4750659 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAATATC 4750600 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| || || Sbjct 4750599 CAGAAGGAGTCGACCCTTCATCTGGT 4750574 >seq1 Length=30017264 Score = 104 bits (114), Expect = 6e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || ||||| || ||||| |||| ||||| || ||||| |||| Sbjct 15159762 CAAGACTCTGACCGGAAAGACCATCACGCTGGAGGTGGAGCCATCGGACACCATCGAGAA 15159703 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||||| || || ||||| || ||||| || | || ||||| Sbjct 15159702 CGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCGGATCAGCAGCGTCTGATCTT 15159643 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| |||||||||| | || || | || ||||| ||||||| ||||| Sbjct 15159642 CGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTGTCAGACTACAATATCCAGAAGGAGTC 15159583 Query 206364 TACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 15159582 CACTCTCCACCTGGT 15159568 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| ||||| ||||| ||||||| ||| ||||| | || || | ||||||||| Sbjct 15159568 ACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCC 15159627 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||||||||| || || || ||| Sbjct 15159628 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGA 15159660 >seq9 Length=6651167 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || |||||| |||| || || || || || |||| Sbjct 534792 AAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCGGATACGATCGAGAAC 534733 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| ||| || || | || |||||| Sbjct 534732 GTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTC 534673 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 534672 GCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 534613 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| | ||| | | ||||| Sbjct 534612 ACCCTCCACTTGGTTCTTCGGCTTCG 534587 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || |||||| |||| || || || || || |||| Sbjct 535195 AAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCATCGGATACGATCGAGAAC 535136 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| ||||| ||| || || | || |||||| Sbjct 535135 GTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTC 535076 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 535075 GCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 535016 Query 206365 AC 206366 || Sbjct 535015 AC 535014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181816105955510