Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 223 5e-52 seq6 100 4e-15 >seq2 Length=22738934 Score = 223 bits (246), Expect = 5e-52 Identities = 348/486 (72%), Gaps = 14/486 (3%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCG-ACACGGTCCAC 1455854 |||| ||||| ||||| ||||| | || ||||| ||||| | || | ||| | || Sbjct 19672568 AGGCGGAGGCTTCCTTCTGGACGGTGGAAGAGGTGGACCT-GTCGAAGGACATGAAAGAC 19672510 Query 1455855 TGGGTGTCGCTGAG-CGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 |||| ||||| | | | | |||||| ||||||||| |||||| || ||||| || || Sbjct 19672509 TGGGAATCGCTCAAACCAAG-CGAGCGTCATTTCATCTCGCACGTGCTTGCCTTCTT-CG 19672452 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 ||||| || || ||||| ||||| |||| | ||||| | | ||||| || Sbjct 19672451 CCGCCTCGGACGGTATCGTAAATGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGG 19672392 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 || | ||||| || | || |||||||| ||||| || || || ||| | ||| |||| Sbjct 19672391 TGACGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCACAGCGAAA 19672332 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 |||||||| ||||||||||| ||| | |||||| ||| ||| | || || Sbjct 19672331 TGTACTCGCTGCTGATCGACACGTACATACGCGACCCGAAGGAGCGGGAGTATCTGTTCA 19672272 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153 ||| ||||| ||| |||||| || | ||| ||||||||||||||| |||| |||||| Sbjct 19672271 ACGCGATCGAAACGCTGCCGTGCGTAAAGAAGAAGGCCGACTGGGCGCTGAACTGGATCT 19672212 Query 1456154 ACA--AGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGC 1456210 || | || |||| |||||| ||||| | || | || || || ||||||||| Sbjct 19672211 CCAGCAAGAAGGCC----AACTTTGGGGAGCGTGTGGTTGCGTTCGCTGCAGTCGAGGGC 19672156 Query 1456211 ATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 ||||| || ||||| || ||| |||||||| ||||| |||||||||||||| ||||| Sbjct 19672155 ATCTTCTTTAGTGGCAGCTT-TGCGGCCATCTTCTGGCTGAAGAAGCGCGGCCTAATGCC 19672097 Query 1456270 CGGTCT 1456275 || || Sbjct 19672096 GGGGCT 19672091 Score = 93.3 bits (102), Expect = 6e-13 Identities = 199/295 (67%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 332924 GTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGG 332983 |||||||| |||| ||||| || || || ||| | | ||||||||||| || || Sbjct 2294982 GTGTTGCATGCCAACGCAAAGCGGGTTGTGTTGCTGTAGATTTCCATGGTCCGGCGTAGC 2294923 Query 332984 GCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGC 333043 ||||| || || | ||| | || ||| ||||| || || || | ||||||||| ||| Sbjct 2294922 GCCTGCTGAGCACCTTCCGTCATGCTGTCCGCCTCATCAAGAATCACGATCTTGTGACGC 2294863 Query 333044 CCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCC 333103 ||| | ||||| ||| ||| | ||| ||||| | | || || || || Sbjct 2294862 CCGCGTGGCAGCGTTACCTTTTGCTGGGCAAACATCTTGATCTTACTACGTACCACATCG 2294803 Query 333104 ACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGG-CGGCCGCACCCAA 333162 | || ||||||| || || || || || ||||||||||| |||| || ||| | Sbjct 2294802 ATACCACGCTCGTTTGAGGCATTCAGCTCAAGCACGGCCTC-TCGGAAATTCGGACCAAG 2294744 Query 333163 GAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 |||| ||| ||||| || ||| |||| || || ||| || || |||||| Sbjct 2294743 CAGGATGCGGGCCAGACAAAGGATAGTCGTAGTTTTACCCACTCCCGGTGGACCC 2294689 >seq6 Length=12084465 Score = 100 bits (110), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| ||||| ||| | ||| ||| ||| || Sbjct 5210998 ATCTACAAGGTGCTGAAGCAGGTCCACCCGGACACC-----GGCAT-CTCGTCCAAAGCC 5211051 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||| || || |||| || || | | || || Sbjct 5211052 ATGAGCATCATGAACAGCTTCGTCAATGATATCTTCGAGCGGATTGCGGCGGAAGCGTCC 5211111 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||| | || |||||| ||| ||||||| | || || || ||||| ||||| Sbjct 5211112 CGCTTGGCTCACTACAACAAACGCTCCACGATCACGTCCCGGGAAATTCAGACGGCCGTC 5211171 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| || || ||||||| ||||||||| |||||||| |||| Sbjct 5211172 CGGTTGCTGCTGCCGGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGAACCA 5211223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177781299930220