Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq4 105 6e-18 seq9 104 2e-17 seq1 96.9 3e-15 seq14 82.4 7e-11 >seq5 Length=12895223 Score = 114 bits (126), Expect = 1e-20 Identities = 220/319 (69%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 44103 CTAGAGACGGCCTCCACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGA 44162 || || || ||| |||||| ||| |||||||||| ||||| || ||| || Sbjct 6100706 CTGGAAACTGCCCACACCCACGATGACCTGTGGAACGCGGCCCAGCTGCAGCTGGTGAAG 6100765 Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || | || |||||| | |||| ||||||||| ||||| ||| | |||||| || Sbjct 6100766 GAGGCCAAGATGCACGGGTTTCTGCGCATGTATTGGGCGAAGAAAATACTAGAGTGGACG 6100825 Query 44223 GAAGATGCGCAAACC-GCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGA 44281 || | || | | ||||||| ||||||||||| ||||| ||||| |||| Sbjct 6100826 AAA-ACGCCCGAGGAAGCGCTCGAAACGGCCATCTATCTCAACGATCGCTACAGCCTGGA 6100884 Query 44282 CGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CA 44340 || ||||| || || || ||||| || || |||||||| || ||| |||| || || Sbjct 6100885 TGGGCGCGATCCGAATGGATACGTCGGGTGCATGTGGTCGATCGCCGGCATCCATGATCA 6100944 Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCG 44400 ||| ||| |||| || | |||||| | ||||||||||||||| |||| ||| Sbjct 6100945 GGG-ATGGAAGGAGCGGGAAATTTTTGGCAAAATTCGCTACATGAACTACGACGGCTGCA 6101003 Query 44401 TCAGAAAGTTTGATGTAAA 44419 |||||||||| || || Sbjct 6101004 AGCGAAAGTTTGACGTGAA 6101022 >seq4 Length=15719670 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || || || | || ||||||||||| || || || Sbjct 15451489 TCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 15451430 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| |||||||| |||| ||| | | ||||||||| |||||| ||||| | || Sbjct 15451429 ATCAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTT 15451370 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | || ||||| | ||||| ||||| || || | |||||||| Sbjct 15451369 TCGATCGTGTCCGAGGGCTCGACCTCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACG 15451310 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 15451309 AAAATCTGCAT 15451299 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || || |||||||||| || || || | || || Sbjct 4750573 CACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCCTC 4750632 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || || | |||||||| |||| || | | |||||||||| Sbjct 4750633 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTG 4750692 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||||| ||||| | | | | ||| || | || ||||| | || || || || Sbjct 4750693 GATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 4750752 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| | ||||| || || |||||||| Sbjct 4750753 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 4750782 >seq9 Length=6651167 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 |||||||| || | || | ||||| || | || |||||| || |||||||| ||| Sbjct 534578 TTTCCACCGCGAAGCCGAAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 534637 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | || || || |||| ||||||||||| || || || |||| |||||||| || | Sbjct 534638 GACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGC 534697 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 || | | |||||||||| |||||| ||| | | | | ||| || || || Sbjct 534698 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCG 534757 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| ||||| || || || |||| || ||||| || |||||||| Sbjct 534758 ACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAAATCTGCAT 534807 Score = 102 bits (112), Expect = 7e-17 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || || || |||||| || |||||||| |||| || || || |||| ||| Sbjct 535002 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 535061 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || || || |||| |||||||| || | || | | ||| |||||| | Sbjct 535062 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCTTTGTCCTGG 535121 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGTT 35704 ||||| ||| | | | | ||| || |||| || ||||||| ||||| || Sbjct 535122 ATCTTGGCCTTGACGTTCTCGATCGTATC---CGATGGCTCGACCTCCAGAGTGATGGTC 535178 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTG 35742 || || |||| || ||||| || ||||||||||| || Sbjct 535179 TTGCCAGTCAGCGTCTTCACGAAGATCTGCATTCTATG 535216 >seq1 Length=30017264 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| || | || ||| || | || ||||||||||| || || || Sbjct 15159585 CTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAA 15159644 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| |||| ||| | || ||||| ||| ||||| ||||| | Sbjct 15159645 GATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTT 15159704 Query 35665 TGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| |||||||||| |||||| || || || |||| ||| || Sbjct 15159705 CTCGATGGTGTC---CGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTT 15159761 Query 35722 CACAAATATCTGCAT 35736 || || || ||||| Sbjct 15159762 GACGAAGATTTGCAT 15159776 >seq14 Length=2944040 Score = 82.4 bits (90), Expect = 7e-11 Identities = 166/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 41194 TGCGCGACACGATCACCCTTCATCACCACAAAGTCCACGTCGTTGTTGTTCACCATCACT 41253 ||||| | ||||||||||||| ||||| | ||||||| ||| || ||| | || || Sbjct 1141846 TGCGCAATACGATCACCCTTCTTCACCTCGAAGTCCATCTCGGAGTGGTTGAACAGGACA 1141905 Query 41254 ATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGCCAGCAGCAATGTCGATCTTGTGC 41313 | || ||||| ||| ||| || || | |||||| || | | ||||| | Sbjct 1141906 ACACCAACGTTTCCCCGGTAATCCTCGTCAACGACGCCTGCCCCCACATCGATGAAATTT 1141965 Query 41314 TTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGTAACAATCTTTGGGCAGCTGCAGA 41373 |||| ||||||||| || || || || | | |||||||| ||| || | ||||| Sbjct 1141966 TTCACCGCCAGCCCGGAGCGTGGTGCTACACGCCCGTAACAGCCTTCCGGTACCTGCACC 1142025 Query 41374 GCAATGTCCGTCTT---GATCAGCGTGCGGTCGTGGCGCGGAACGATGTAGTCGTAGGCG 41430 |||||| ||| | || || ||| ||| |||| || || |||||||||||||| Sbjct 1142026 TGAATGTCGGTCATTACGAGTTGCTTGC-CTCG-GGCG-GGTACCGTGTAGTCGTAGGCG 1142082 Query 41431 CT 41432 || Sbjct 1142083 CT 1142084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791853174800