Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq14 322 7e-83 seq2 132 7e-26 >seq14 Length=2944040 Score = 322 bits (356), Expect = 7e-83 Identities = 1005/1542 (65%), Gaps = 23/1542 (1%) Strand=Plus/Minus Query 68701 AGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTG 68760 ||||| | || || | ||||| || || || | ||||| || |||| | || Sbjct 128235 AGATGATGGTTTACAACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTAGACGTTCGAC 128176 Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 || || ||||| | || ||||| || ||||| ||||||||||| || || |||||||| Sbjct 128175 GTGTACGGTTCGAACGACTCATTGTTGCCCAGTATTTGAGCAGTCGAAGCTGTTGGCATC 128116 Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTC 68880 ||||| | || | || | || || || || || || || || | | Sbjct 128115 GGTGCTAGCAGCAGTGAGTTACGAATGCCGTGCTTTGCAATCTTTTCCTTCAACGCCACC 128056 Query 68881 CAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTT 68940 |||| ||| ||||| | ||| | ||||| | ||||| || ||||| || || ||| Sbjct 128055 CAATTCCACAGATCCGTCGGTTCCTTGTTCCACATGTCGTACTGCAGAATGCCCTTGCTT 127996 Query 68941 GCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCC 69000 | | || | || || || || || || |||| | || | ||| || || || Sbjct 127995 ACCGGACAACCTTCGTACGTCTCGTACGGCCCATCCTTGGCGGCCAATTCGCAGCTAGCT 127936 Query 69001 TCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGA 69060 || | || || || || || ||||| || || | || ||| || | || |||| | Sbjct 127935 TCCAGCGCTCCATAGTAGATGGTTTCAAATATTTGCTGATTAAGCTTCTGCGCTTGCTCA 127876 Query 69061 CTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCG 69120 || ||| | ||| | | | ||| || ||||| |||| ||||| || || || ||| Sbjct 127875 CTCTCGTACGGAAAGCCCATCAAAATGAACGCATCGGCCATACCCTGGACACCGATGCCG 127816 Query 69121 ATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCT 69180 || || | || | | | || || | | ||||| || | || || || || | || Sbjct 127815 ATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAGTAGTTCACGTCA 127756 Query 69181 ATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA 69240 || || || |||||||| || || | || | || ||||| || || ||||| Sbjct 127755 ATGATCTTGTTAAGATTGCGTGTCACGATCTTGGCGACCTCCTTCAGCTTCTCGAAATCG 127696 Query 69241 AATCGTCC-ATCTATA---ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGC 69296 | ||| | ||| |||||||| |||| || | || || | ||| || || || Sbjct 127695 TA-CGTACGATCGGGCTGCACAAACATGTTCAACGCAATCGAGGCCAAATTGCATACGGC 127637 Query 69297 TACCTCAT---TAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGAT 69353 || || | | || | ||||| | |||||| || || || ||| |||||||| Sbjct 127636 CACTTCGTCCTTCGAC---GAATATTCCACTATCTCAGTGCAAAGGTTAGAGCATTTGAT 127580 Query 69354 AGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGG 69413 ||| || | |||||||| || || || || || || |||||||| || || |||| Sbjct 127579 AGTGCCAATGTTTTGCTGGTTGCTTTTGCGATTGCACGCATCCTTGTACAGCATGTACGG 127520 Query 69414 AGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA-GCATTTATTA 69472 || ||||| | ||| || ||||| || | ||| | || | | || || | | Sbjct 127519 TACGCCCGTTTCCACCTGTGACTCGATGATCGCAAACCACA-GATCTTGCGCCTTCACTT 127461 Query 69473 CGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCC 69530 | | | ||| || | ||||| || ||| || || ||| ||||| || || || Sbjct 127460 --GACGTATAAAGCGACCCTCTTTCTCGTATCCCGTGTACAGCTTCTCGAACTCTTCGCC 127403 Query 69531 CCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATC 69590 ||| ||| ||| || ||||| || | || |||||||| |||| |||| | Sbjct 127402 CCATGAATCGGCCAGCCCGGGACAATCGTGGGGGCACATCAAACTCCACGTTTCATTCGC 127343 Query 69591 CTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCT 69650 || || || ||||| || ||||| || ||||| ||||| || | ||| | | | Sbjct 127342 CTCCACACGCTTCATGAACAGATCCGGTATCCACAGAGCGTAGAACATATCCCGAGCACG 127283 Query 69651 ATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCA 69710 | || || || || || ||||| || ||||| |||||||| | | |||| |||||| Sbjct 127282 AACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCAAACACATCACCATGCCA 127223 Query 69711 TGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCT 69770 ||||| || || || || | | || || || ||||| || |||||||| | ||| || Sbjct 127222 CGGTTCGAGGTAGATAGCAAACGCGCCTGGGCGCTTATTACCGCCCTGATCAACGTACCT 127163 Query 69771 GGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCC 69830 || ||||| || || || | |||||||| | | || || || |||| || || || Sbjct 127162 TGCCGTGTTGTTGTACACACGTAGCATCGGTACCAGCCCGTTCGAAATACCGTTCGTGCC 127103 Query 69831 AGAAATATAACTTCCTCTTGCGCGAAT--ATTACTAATAGATAGACCTATTCCTCCTGCC 69888 || || || |||| | || || || | | | || | | || || || || ||| Sbjct 127102 GGAGATGTACGTTCCCTTCGCACGGATGCAGTGCACATTCA--GTCCGATACCACCGGCC 127045 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 ||| ||||| | || || | || | || || || ||||| || |||||||| || Sbjct 127044 GATTTCGAGATCAATGCGCATTGCTTTAGAGTATCGTAGATACCTTCGATGCTATCGTCC 126985 Query 69949 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAAT 70008 |||| | || ||||| || ||| | ||| || | || |||| ||| | Sbjct 126984 GACATGGTCAGCAGAAAGCAAGAAGAAAGCTGAGGACGCTGTGTGGCCGCCGCAAACATG 126925 Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068 || ||||| ||||| || || | || |||||||||||||| || || || |||| Sbjct 126924 GTCGGAGAAGCGTGGGTAAAGTAACGCTCTGAAAGCAGATTGTACGTCTCGATCGCTGCC 126865 Query 70069 TCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 || || ||| | | | || || || || ||||||||||||||||||||||| |||| || Sbjct 126864 TCAATGTCCTCGCCG-TGGATGCCAATGGCGACACGCATCAACATATGCTGCGGTCTCTC 126806 Query 70128 TACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATA 70187 || | || || |||||||||| || ||| |||||||||||||| || ||||| Sbjct 126805 GACAATCTTTCCCTTGATTTTCAACAAATACGATCGCTCCAGAGTTTTAAAACCGAAATA 126746 Query 70188 GTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAG 70229 ||||| |||||| | |||||||| || | |||||||| Sbjct 126745 ATTGTACCCAAAGTCACGATCGTAAATGATGGCCGAATTTAG 126704 Score = 309 bits (342), Expect = 4e-79 Identities = 1002/1542 (65%), Gaps = 23/1542 (1%) Strand=Plus/Minus Query 68701 AGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTG 68760 ||||| | || || | ||||| || || || | ||||| || |||| | || Sbjct 113524 AGATGATGGTTTACAACCTGAAACTCGCCCGAAAGCACTCGTCGGTTGTAGACGTTCGAC 113465 Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 || || ||||| | || ||||| || ||||| ||||||||||| || || |||||||| Sbjct 113464 GTGTACGGTTCGAACGACTCATTGTTGCCCAGTATTTGAGCAGTCGAAGCTGTTGGCATC 113405 Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTC 68880 ||||| | || | || | || || || || || || || || | | Sbjct 113404 GGTGCTAGCAGCAGTGAGTTACGAATGCCGTGCTTTGCAATCTTTTCCTTCAACGCCACC 113345 Query 68881 CAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTT 68940 |||| ||| ||||| | ||| | ||||| | ||||| || ||||| || || ||| Sbjct 113344 CAATTCCACAGATCCGTCGGTTCCTTGTTCCACATGTCGTACTGCAGAATGCCCTTGCTT 113285 Query 68941 GCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCC 69000 | | || | || || || || || || |||| | || | ||| || || || Sbjct 113284 ACCGGACAACCTTCGTACGTCTCGTACGGCCCATCCTTGGCGGCCAATTCGCAGCTAGCT 113225 Query 69001 TCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGA 69060 || | || || || || || ||||| || || | || ||| || | || |||| | Sbjct 113224 TCCAGCGCTCCATAGTAGATGGTTTCAAATATTTGCTGATTAAGCTTCTGCGCTTGCTCA 113165 Query 69061 CTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCG 69120 || ||| | ||| | | | ||| || ||||| |||| ||||| || || || ||| Sbjct 113164 CTCTCGTACGGAAAGCCCATCAAAATGAACGCATCGGCCATACCCTGGACACCGATGCCG 113105 Query 69121 ATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCT 69180 || || | || | | | || || | | ||||| || | || || || || | || Sbjct 113104 ATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAGTAGTTCACGTCA 113045 Query 69181 ATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA 69240 || || || |||||||| || || | || | || ||||| || || ||||| Sbjct 113044 ATGATCTTGTTAAGATTGCGTGTCACGATCTTGGCGACCTCCTTCAGCTTCTCGAAATCG 112985 Query 69241 AATCGTCC-ATCTATA---ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGC 69296 | ||| | ||| |||||||| |||| || | || || | ||| || || || Sbjct 112984 TA-CGTACGATCGGGCTGCACAAACATGTTCAACGCAATCGAGGCCAAATTGCATACGGC 112926 Query 69297 TACCTCAT---TAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGAT 69353 || || | | || | ||||| | |||||| || || || ||| |||||||| Sbjct 112925 CACTTCGTCCTTCGAC---GAATATTCCACTATCTCAGTGCAAAGGTTAGAGCATTTGAT 112869 Query 69354 AGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGG 69413 ||| || | |||||||| || || || || || || |||||||| || || |||| Sbjct 112868 AGTGCCAATGTTTTGCTGGTTGCTTTTGCGATTGCACGCATCCTTGTACAGCATGTACGG 112809 Query 69414 AGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA-GCATTTATTA 69472 || ||||| | ||| || ||||| || | ||| | || | | || || | | Sbjct 112808 TACGCCCGTTTCCACCTGTGACTCGATGATCGCAAACCACA-GATCTTGCGCCTTCACTT 112750 Query 69473 CGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCC 69530 | | | ||| || | ||||| || ||| || || ||| ||||| || || || Sbjct 112749 --GACGTATAAAGCGACCCTCTTTCTCGTATCCCGTGTACAGCTTCTCGAACTCTTCGCC 112692 Query 69531 CCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATC 69590 ||| ||| ||| || ||||| || | || |||||||| |||| |||| | Sbjct 112691 CCATGAATCGGCCAGCCCGGGACAATCGTGGGGGCACATCAAACTCCACGTTTCATTCGC 112632 Query 69591 CTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCT 69650 || || || ||||| || ||||| || ||||| ||||| || | ||| | | | Sbjct 112631 CTCCACACGCTTCATGAACAGATCCGGTATCCACAGAGCGTAGAACATATCCCGAGCACG 112572 Query 69651 ATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCA 69710 | || || || || || ||||| || ||||| |||||||| | | |||| |||||| Sbjct 112571 AACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCAAACACATCACCATGCCA 112512 Query 69711 TGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCT 69770 ||||| || || || || | | || || || ||||| || |||||||| | ||| || Sbjct 112511 CGGTTCGAGGTAGATAGCAAACGCGCCTGGGCGCTTATTACCGCCCTGATCAACGTACCT 112452 Query 69771 GGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCC 69830 || ||||| || || || | |||||||| | | || || || |||| || || || Sbjct 112451 TGCCGTGTTGTTGTACACACGTAGCATCGGTACCAGCCCGTTCGAAATACCGTTCGTGCC 112392 Query 69831 AGAAATATAACTTCCTCTTGCGCGAAT--ATTACTAATAGATAGACCTATTCCTCCTGCC 69888 || || || |||| | || || || | | | || | | || || || || ||| Sbjct 112391 GGAGATGTACGTTCCCTTCGCACGGATGCAGTGCACATTCA--GTCCGATACCACCGGCC 112334 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 ||| ||||| | || || | || | || || || ||||| || |||||||| || Sbjct 112333 GATTTCGAGATCAATGCGCATTGCTTTAGAGTATCGTAGATACCTTCGATGCTATCGTCC 112274 Query 69949 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAAT 70008 |||| | || ||||| || ||| | ||| || | || |||| ||| | Sbjct 112273 GACATGGTCAGCAGAAAGCAAGAAGAAAGCTGAGGACGCTGTGTGGCCGCCGCAAACATG 112214 Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068 || ||||| ||||| || || | || |||||||||||||| || || || |||| Sbjct 112213 GTCGGAGAAGCGTGGGTAAAGTAACGCTCCGAAAGCAGATTGTACGTCTCGATCGCTGCC 112154 Query 70069 TCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 || || ||| | | | || || || || |||||||||||||||||||| || |||| || Sbjct 112153 TCAATGTCCTCGCCG-TGGATGCCAATAGCGACACGCATCAACATATGTTGCGGTCTCTC 112095 Query 70128 TACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATA 70187 || | || || || ||||||| || ||| ||||| |||||||| || ||||| Sbjct 112094 GACAATCTTTCCCTTGATCTTCAACAAATACGATCGCTCCAGGGTTTTAAAACCGAAATA 112035 Query 70188 GTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAG 70229 ||||| |||||| | |||||||| || | |||||||| Sbjct 112034 ATTGTACCCAAAGTCACGATCGTAAATGATGGCCGAATTTAG 111993 >seq2 Length=22738934 Score = 132 bits (146), Expect = 7e-26 Identities = 294/438 (67%), Gaps = 5/438 (1%) Strand=Plus/Plus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 ||||| | |||||| |||||||| || || ||||| || | || | ||||| || Sbjct 19672025 AACATCAGGCAGGCAAAGTCACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAG 19672084 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || || || |||||||| || ||||| || ||||| || ||||| ||||| ||| Sbjct 19672085 AACGTCAGCCCCGGCATTAGGCCGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCA 19672144 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG--TAT 39785 |||||||||||| || ||||| || || ||||| | | ||| || || ||| | Sbjct 19672145 CTAAAGAAGATGCCCTCGACTGCAGCGAACGCAACCACACGCTC-CCCAAAGTTGGCCTT 19672203 Query 39786 CATTATG--TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 | | || ||||| ||| | ||||| || || ||||||||||| || |||| ||||| Sbjct 19672204 CTTGCTGGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTC 19672263 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 || || || || ||||| | || | || | || || || || | ||| Sbjct 19672264 GATCGCGTTGAACAGATACTCCCGCTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAG 19672323 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 |||||||| || | ||| || ||||| |||||||| ||||| || || | || Sbjct 19672324 CGAGTACATTTCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGC 19672383 Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023 || || | || ||||| | || | ||| ||| ||| ||||| || || || || Sbjct 19672384 CTCCGTCACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTTACGATACCGTC 19672443 Query 40024 ACTAGCGGCAAAAAATGC 40041 ||||| || || || Sbjct 19672444 CGAGGCGGCGAAGAAGGC 19672461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906138228400