Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq12 100 2e-16 >seq12 Length=3202847 Score = 100 bits (110), Expect = 2e-16 Identities = 233/346 (67%), Gaps = 14/346 (4%) Strand=Plus/Minus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||||||| | || ||||| || || ||||| | |||||| ||||||||||||| ||| Sbjct 246944 AGGTGATTTGGGGCCTGTGTACGGGTTTCAATGGCGACACTTTGGAGCAAAAT---ACAA 246888 Query 40925 TATGTACTCT---GATTATACCAATAAAGGAATGGATCAA-TTACAGTGCGTTATAGATA 40980 | || | | ||||| || |||| ||||| ||| || ||| | || || || | Sbjct 246887 AACGTGCCATGACGATTACACTGGGCAAGGCATGGACCAACTTGCAGAG-GTAATCGACA 246829 Query 40981 CGATTAAATCCGATCC---CGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGG 41037 ||||||| | | || |||| || || || || || |||| ||||| || | | Sbjct 246828 AGATTAAAAACAACCCGTACGAT---CGTCGAATCATCATGAGCGCCTGGAATCCGTCCG 246772 Query 41038 ACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATG 41097 | | | | ||||| | |||||||| |||| || ||| |||| ||| || | Sbjct 246771 ATATCCCTAATATGGCTCTTCCACCTTGCCATTGCTTGGCTCAATTTTTTGTTGATAACG 246712 Query 41098 GTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTA 41157 | ||| | ||||| || |||||||| |||| | || |||| | || || || || | Sbjct 246711 GAGAATTATCATGCCAGATGTATCAACGATCGGCCGATGTGGGCTTGGGTGTACCATTCA 246652 Query 41158 ACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 |||| || || || | |||| || ||||||| || ||||| || Sbjct 246651 ACATCGCAAGCTACTCGTTGCTTACCCATATGATCGCGCACGTCAC 246606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454498361550