Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17]
310 sequences; 183,103,254 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq4 154 4e-32
seq1 149 2e-30
seq9 113 1e-19
seq5 95.1 4e-14
seq3 91.5 4e-13
>seq4
Length=15719670
Score = 154 bits (170), Expect = 4e-32
Identities = 174/233 (75%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564
||| |||||||||| | || || || || ||||| || || || || || || || ||
Sbjct 15451531 TACTTACCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAG 15451472
Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624
|| || | || || ||||| || || || || || || ||||| ||||| ||||||||
Sbjct 15451471 TCCGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCC 15451412
Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684
||||| |||||||| || ||||| || || || || ||||| || |||| || || ||
Sbjct 15451411 GGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGC 15451352
Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || ||||| || | || || ||||| |||||||| || |||||||||||
Sbjct 15451351 TCGACCTCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 15451299
>seq1
Length=30017264
Score = 149 bits (164), Expect = 2e-30
Identities = 174/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
|||| | || ||||| | | || || || || ||||| ||||| || || ||||| |
Sbjct 15159542 TTTAAAAGCCTCCACGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGT 15159601
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || |||||||| || || ||||| || ||||| ||||| |||||||
Sbjct 15159602 AGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGAT 15159661
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| ||||| || ||||| ||||||||||| ||||| || || || || || | || ||||
Sbjct 15159662 CCGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATG 15159721
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || || || || | ||||||||||| || || || || || || |||||
Sbjct 15159722 GCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT 15159776
Score = 105 bits (116), Expect = 2e-17
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 140544 GACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCA 140603
|| || || || ||||| || || |||| | || |||||||| || | ||||| ||
Sbjct 15157072 GATTCCTTCTGGATATTGTAGTCTGATAGGGCACGGCCATCTTCCAGATACTTTCCGGCG 15157131
Query 140604 AAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACA 140663
||| ||| ||||||| | ||| | ||||| ||| ||||||| ||||| || ||
Sbjct 15157132 AAGTAAAGATACTGCTGATACGAAGGCGTGCCTTCCTTAACCTGAATCTTAGCCTTCACG 15157191
Query 140664 TTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTT 140723
| || || | || |||||||||||||| || || | ||||||||||| || |||||
Sbjct 15157192 ATCTCGATGGTGTCCGATGGTTCAACTTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTG 15157251
Query 140724 ACAAAAATCTGCA 140736
|| || || ||||
Sbjct 15157252 ACGAAGATTTGCA 15157264
Score = 93.3 bits (102), Expect = 1e-13
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948
||||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| |
Sbjct 241865 GGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGAT 241924
Query 235949 ACCCAGCATCTCCA 235962
|||| |||||||||
Sbjct 241925 ACCCGGCATCTCCA 241938
Score = 93.3 bits (102), Expect = 1e-13
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 13084837 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 13084778
Query 235950 CCCAGCATCTCCA-TACAATG 235969
||| ||||||||| ||||||
Sbjct 13084777 CCCGGCATCTCCAGAACAATG 13084757
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 229100 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 229159
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 229160 CCCGGCATCTCCA 229172
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 13079261 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 13079320
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 13079321 CCCGGCATCTCCA 13079333
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 23768685 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 23768744
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 23768745 CCCGGCATCTCCA 23768757
Score = 84.2 bits (92), Expect = 7e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 140607 ATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTA 140666
|| ||| |||| ||||| | ||| || ||||| || |||||||| ||||| || || ||
Sbjct 15156907 ATCAGATGTTGTTGATCCGCAGGGATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTC 15156966
Query 140667 TCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACA 140726
|| || | || ||||| || || || || || | ||||||||||| || || || | |
Sbjct 15156967 TCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTAATA 15157026
Query 140727 AAAATCTGCAT 140737
|| || |||||
Sbjct 15157027 AAGATTTGCAT 15157037
>seq9
Length=6651167
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
||||| | || || || ||||| || || || || || || || | || || || ||
Sbjct 534596 AGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 534655
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| || || || || || ||||| ||||| |||||||| || || ||||| || || |||
Sbjct 534656 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 534715
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || || || || || || |||| ||| || || || || || || || | |||
Sbjct 534716 TGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTC 534775
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || || || |||||||||||
Sbjct 534776 TTGCCAGTCAGCGTCTTCACGAAAATCTGCAT 534807
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 261458 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 261517
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 261518 CCCGGCATCTCCA 261530
>seq5
Length=12895223
Score = 95.1 bits (104), Expect = 4e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 3484315 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 3484256
Query 235950 CCCAGCATCTCCATACA 235966
||| ||||||||| |||
Sbjct 3484255 CCCGGCATCTCCAAACA 3484239
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 3552531 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 3552472
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 3552471 CCCGGCATCTCCA 3552459
>seq3
Length=16089237
Score = 91.5 bits (100), Expect = 4e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949
|||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |
Sbjct 605064 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 605123
Query 235950 CCCAGCATCTCCA 235962
||| |||||||||
Sbjct 605124 CCCGGCATCTCCA 605136
Score = 91.5 bits (100), Expect = 4e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 235885 TATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGAT 235944
||| ||||||||||| ||| ||||||| ||||||||| ||||| ||||||||| |||||
Sbjct 4567553 TATCGGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACGGGGAT 4567494
Query 235945 CAAAACCCAGCATCTCCA 235962
| | |||| |||||||||
Sbjct 4567493 CGATACCCCGCATCTCCA 4567476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515248381598930
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |