Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4 154 4e-32 seq1 149 2e-30 seq9 113 1e-19 seq5 95.1 4e-14 seq3 91.5 4e-13 >seq4 Length=15719670 Score = 154 bits (170), Expect = 4e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564 ||| |||||||||| | || || || || ||||| || || || || || || || || Sbjct 15451531 TACTTACCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAG 15451472 Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624 || || | || || ||||| || || || || || || ||||| ||||| |||||||| Sbjct 15451471 TCCGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCC 15451412 Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684 ||||| |||||||| || ||||| || || || || ||||| || |||| || || || Sbjct 15451411 GGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGC 15451352 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | || || ||||| |||||||| || ||||||||||| Sbjct 15451351 TCGACCTCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 15451299 >seq1 Length=30017264 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 |||| | || ||||| | | || || || || ||||| ||||| || || ||||| | Sbjct 15159542 TTTAAAAGCCTCCACGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGT 15159601 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || |||||||| || || ||||| || ||||| ||||| ||||||| Sbjct 15159602 AGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGAT 15159661 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || ||||| ||||||||||| ||||| || || || || || | || |||| Sbjct 15159662 CCGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATG 15159721 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || | ||||||||||| || || || || || || ||||| Sbjct 15159722 GCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT 15159776 Score = 105 bits (116), Expect = 2e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 140544 GACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCA 140603 || || || || ||||| || || |||| | || |||||||| || | ||||| || Sbjct 15157072 GATTCCTTCTGGATATTGTAGTCTGATAGGGCACGGCCATCTTCCAGATACTTTCCGGCG 15157131 Query 140604 AAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACA 140663 ||| ||| ||||||| | ||| | ||||| ||| ||||||| ||||| || || Sbjct 15157132 AAGTAAAGATACTGCTGATACGAAGGCGTGCCTTCCTTAACCTGAATCTTAGCCTTCACG 15157191 Query 140664 TTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTT 140723 | || || | || |||||||||||||| || || | ||||||||||| || ||||| Sbjct 15157192 ATCTCGATGGTGTCCGATGGTTCAACTTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTG 15157251 Query 140724 ACAAAAATCTGCA 140736 || || || |||| Sbjct 15157252 ACGAAGATTTGCA 15157264 Score = 93.3 bits (102), Expect = 1e-13 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | Sbjct 241865 GGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGAT 241924 Query 235949 ACCCAGCATCTCCA 235962 |||| ||||||||| Sbjct 241925 ACCCGGCATCTCCA 241938 Score = 93.3 bits (102), Expect = 1e-13 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 13084837 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 13084778 Query 235950 CCCAGCATCTCCA-TACAATG 235969 ||| ||||||||| |||||| Sbjct 13084777 CCCGGCATCTCCAGAACAATG 13084757 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 229100 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 229159 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 229160 CCCGGCATCTCCA 229172 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 13079261 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 13079320 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 13079321 CCCGGCATCTCCA 13079333 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 23768685 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 23768744 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 23768745 CCCGGCATCTCCA 23768757 Score = 84.2 bits (92), Expect = 7e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 140607 ATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTA 140666 || ||| |||| ||||| | ||| || ||||| || |||||||| ||||| || || || Sbjct 15156907 ATCAGATGTTGTTGATCCGCAGGGATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTC 15156966 Query 140667 TCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACA 140726 || || | || ||||| || || || || || | ||||||||||| || || || | | Sbjct 15156967 TCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTAATA 15157026 Query 140727 AAAATCTGCAT 140737 || || ||||| Sbjct 15157027 AAGATTTGCAT 15157037 >seq9 Length=6651167 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | || || || ||||| || || || || || || || | || || || || Sbjct 534596 AGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 534655 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| ||||| |||||||| || || ||||| || || ||| Sbjct 534656 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 534715 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || |||| ||| || || || || || || || | ||| Sbjct 534716 TGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTC 534775 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || ||||||||||| Sbjct 534776 TTGCCAGTCAGCGTCTTCACGAAAATCTGCAT 534807 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 261458 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 261517 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 261518 CCCGGCATCTCCA 261530 >seq5 Length=12895223 Score = 95.1 bits (104), Expect = 4e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 3484315 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 3484256 Query 235950 CCCAGCATCTCCATACA 235966 ||| ||||||||| ||| Sbjct 3484255 CCCGGCATCTCCAAACA 3484239 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 3552531 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 3552472 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 3552471 CCCGGCATCTCCA 3552459 >seq3 Length=16089237 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 605064 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 605123 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 605124 CCCGGCATCTCCA 605136 Score = 91.5 bits (100), Expect = 4e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 235885 TATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGAT 235944 ||| ||||||||||| ||| ||||||| ||||||||| ||||| ||||||||| ||||| Sbjct 4567553 TATCGGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACGGGGAT 4567494 Query 235945 CAAAACCCAGCATCTCCA 235962 | | |||| ||||||||| Sbjct 4567493 CGATACCCCGCATCTCCA 4567476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515248381598930