Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 176 5e-39 seq4 158 1e-33 seq9 145 9e-30 seq19 125 8e-24 seq2 89.7 6e-13 >seq1 Length=30017264 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||| ||||| || || || ||||| ||| || Sbjct 15159776 ATGCAAATCTTCGTCAAGACTCTGACCGGAAAGACCATCACGCTGGAGGTGGAGCCATCG 15159717 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||||||||| |||||||| ||||| || || ||||| || ||| Sbjct 15159716 GACACCATCGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCGGATCAG 15159657 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || |||| |||||||| ||||||| ||| Sbjct 15159656 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTGTCAGACTACAAT 15159597 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || | ||||| || || || Sbjct 15159596 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGTCTGCGTGGAGG 15159550 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||| | ||||| || ||||| ||||| || || || ||||| ||| || Sbjct 15157037 ATGCAAATCTTTATTAAGACTCTGACCGGAAAGACCATCACGCTGGAGGTGGAGCCATCG 15156978 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||||||||| |||||||||||||| || || ||| | || || Sbjct 15156977 GACACCATCGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATCCCTGCGGATCAA 15156918 Query 27526 CAGCGTCTAATTT 27538 || | ||| |||| Sbjct 15156917 CAACATCTGATTT 15156905 >seq4 Length=15719670 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || || ||||| ||||| |||||||| ||| | Sbjct 4750782 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 4750723 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || || |||||||||||||| || || || || ||| Sbjct 4750722 GATACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCGCCGGATCAG 4750663 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| || || || | || || ||| Sbjct 4750662 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAAT 4750603 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||||| || | || || |||||||| Sbjct 4750602 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 4750556 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || || |||||||| || || ||||||||||| ||| | Sbjct 15451299 ATGCAGATTTTCGTGAAAACACTCACCGGCAAAACCATCACTCTTGAGGTCGAGCCCTCG 15451358 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| ||||||| || || ||||||||||| ||||| ||||| || ||| Sbjct 15451359 GACACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCGGATCAG 15451418 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| || || || | ||||| || Sbjct 15451419 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAAC 15451478 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| ||||| || || | || || || ||||| Sbjct 15451479 ATCCAGAAGGAATCCACCCTTCACCTGGTGCTCCGACTCCGTGGTGG 15451525 >seq9 Length=6651167 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||||| || |||||||| || ||||| ||||| ||| | Sbjct 534807 ATGCAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 534748 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||||| || || ||||||||||||||||| || ||||| ||| Sbjct 534747 GATACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 534688 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||| | || || || | ||||| || Sbjct 534687 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 534628 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || || || | || | || |||||||||||| Sbjct 534627 ATCCAGAAGGAGTCGACCCTCCACTTGGTTCTTCGGCTTCGCGGTGGA 534580 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| ||||| || |||||||| || |||||||| || ||||| ||||| ||| | Sbjct 535214 TAGAATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCC 535155 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 | |||| || | || | ||||| || || |||||||| |||||||| || ||||| Sbjct 535154 ATCGGATACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCGCCAGA 535095 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||||||||| || || || || ||||| || ||||| | || || || | ||||| Sbjct 535094 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTA 535035 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || || | || | ||| | ||||| || || || Sbjct 535034 CAACATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGAGGAGG 534984 >seq19 Length=1744624 Score = 125 bits (138), Expect = 8e-24 Identities = 188/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 31177 GGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGT 31236 || || || ||||| |||| ||| ||||||||||| || ||||| ||| |||||| Sbjct 911201 GGCTCGAAGAAGTCGAAGATTAAGGGCATTCCGAAGCTGGAGGACGCGAACGATGCCGGT 911260 Query 31237 ACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTT 31296 | | ||| |||| | | |||||||| || | |||||||| |||||||| || || | Sbjct 911261 TCGCGCAATTCGCTCAACTGCACGCTCATCCTGACCGAGGGAGACTCGGCCAAAACGTTG 911320 Query 31297 GCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGC 31356 || | | || || | || || || ||| | ||| ||| ||||||||||| || || Sbjct 911321 GCCGTGTCGGGGCTGGGGGTGGTCGGACGCGACACGTACGGTGTGTTTCCGCTGCGCGGT 911380 Query 31357 AAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCC 31416 |||| || ||||| || || || || || ||| | ||| || | ||| | | Sbjct 911381 AAGCTGCTGAACGTGCGCGAAGCGACCCACAAGCAGATCCTGGAGAACGCAGAAATCAAC 911440 Query 31417 AACCTGAAAAAGATCCTCGGGCTTCAG 31443 ||||||| |||||||||||||| ||| Sbjct 911441 AACCTGATCAAGATCCTCGGGCTGCAG 911467 Score = 105 bits (116), Expect = 8e-18 Identities = 279/424 (66%), Gaps = 4/424 (1%) Strand=Plus/Plus Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTC 32042 |||||| | ||||| ||||| |||||| | | | ||| ||||| ||| Sbjct 912076 GGACGGGTTGAAGCCGGGCCAGCGGAAGGTGCTGTTTACGTGCTTCAAGCGTAACGACAA 912135 Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 | | || |||||||||| ||| || | || | ||||| || | || || || || Sbjct 912136 GCGCGAGGTGAAGGTGGCCCAGTTGGCAGGTTCGGTGGCGGAAATGTCCGCGTACCATCA 912195 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 ||||||| ||||||| || || ||||||| || ||||||| ||||| || Sbjct 912196 CGGCGAGCAGTCGCTCTGTTCGACGATCATCAACCTGGCGCAGAACTACGTCGGCAGCAA 912255 Query 32163 TAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 ||| | ||| | || | || || |||||||| || ||| | | || || ||||| Sbjct 912256 CAACATCAACCTGCTGTACCCGGGCGGTCAGTTTGGTACGCGGTTGACGGGCGGTAAGGA 912315 Query 32223 TGCTGCGAGCTCCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTC 32280 | || ||| | | ||||||||||| | ||| ||| |||||| |||||| Sbjct 912316 TAGCGCCAGCCCGAGGTACATCTTCACGATGATGTCGGCCCT--GACGCGGTGCATTTTC 912373 Query 32281 GACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 ||||| ||||||| || |||| ||||| | || || || ||||| |||| ||| Sbjct 912374 CACCCGCTGGACGATCCGCTGCTGGAGTACCAGTTCGAGGATAACCAGCGCATCGAACCG 912433 Query 32341 GTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACG 32400 || | || ||| | | |||||| | || | |||||||| || || ||||| || Sbjct 912434 GTTTGGTATCTGCCGATCGTGCCGATGCTGCTGATCAACGGTGCGGACGGTATCGGTACC 912493 Query 32401 GGGT 32404 |||| Sbjct 912494 GGGT 912497 >seq2 Length=22738934 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 64774 ATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || |||||||| || ||||| ||||| ||||| || ||| |||| ||||||||||||||| Sbjct 19672128 ATCTTCTGGCTGAAGAAGCGCGGCCTAATGCCGGGGCTGACGTTCTCGAACGAGCTGATC 19672069 Query 64834 TCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 || || |||||||| || ||| || ||||| Sbjct 19672068 TCGCGCGACGAGGGACTGCACTGTGACTTTGC 19672037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308190047200