Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17]
310 sequences; 183,103,254 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq9 91.5 9e-14
seq4 87.8 1e-12
>seq9
Length=6651167
Score = 91.5 bits (100), Expect = 9e-14
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| || | ||||| ||||| || |||||| || ||||| || || ||
Sbjct 534581 CCACCGCGAAGCCGAAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 534640
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || || || || ||||| || || | |||||| || || |||||
Sbjct 534641 AGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 534700
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| |||||| | || ||| | || || || ||| ||
Sbjct 534701 ATTCCCTCCTTGTCCTGGATCTTG-GCCTTGACGTTCTCGATCGTATCCGACGGCTCGAC 534759
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|||| || || || || || || | ||| ||||| ||||||||||||
Sbjct 534760 CTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAAATCTGCATG 534808
>seq4
Length=15719670
Score = 87.8 bits (96), Expect = 1e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||||| || || ||| ||||| || ||||| || || || || || ||
Sbjct 15451516 AGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGG 15451457
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| || ||||| || | ||| |||
Sbjct 15451456 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCCTTCC 15451397
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668
||||| |||||| || | | || ||||| | ||| || || | ||
Sbjct 15451396 TTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGAGTG 15451337
Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| ||||| ||||| | |||||||| ||||||||||||||
Sbjct 15451336 ATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 15451296
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/224 (69%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||||| ||| || || |||||| || || || ||||| || || || ||
Sbjct 4750565 AGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGG 4750624
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| || |||||||| | ||||||
Sbjct 4750625 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCC 4750684
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| |||| || || | || || || | ||| || || | |||
Sbjct 4750685 TTGTCCTGGATC-TTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGT 4750743
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711
|| || ||||| || | ||||| || || |||||||| ||||
Sbjct 4750744 AATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGA 4750787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314728410912230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |