Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5 178 1e-39 seq9 145 7e-30 seq4 125 6e-24 seq1 116 3e-21 >seq5 Length=12895223 Score = 178 bits (196), Expect = 1e-39 Identities = 225/309 (73%), Gaps = 3/309 (1%) Strand=Plus/Plus Query 135465 ATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGAT 135524 |||||| ||||||||||||| || | |||||| | || | ||| |||||||| | Sbjct 6100728 ATGACC---TGTGGAACGCGGCCCAGCTGCAGCTGGTGAAGGAGGCCAAGATGCACGGGT 6100784 Query 135525 TTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGC 135584 || |||||||||||||||| || || ||| | || ||| | | |||| | || |||| Sbjct 6100785 TTCTGCGCATGTATTGGGCGAAGAAAATACTAGAGTGGACGAAAACGCCCGAGGAAGCGC 6100844 Query 135585 TACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCT 135644 | || || || | | | || ||| |||||| | ||||| |||||| | ||||| | Sbjct 6100845 TCGAAACGGCCATCTATCTCAACGATCGCTACAGCCTGGATGGGCGCGATCCGAATGGAT 6100904 Query 135645 ACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAG 135704 |||| || || |||||||| || ||| | || ||||| |||||||||||||| || Sbjct 6100905 ACGTCGGGTGCATGTGGTCGATCGCCGGCATCCATGATCAGGGATGGAAGGAGCGGGAAA 6100964 Query 135705 TGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAATT 135764 | |||||||| |||||||| |||||||| ||||| || | |||| ||| | || || Sbjct 6100965 TTTTTGGCAAAATTCGCTACATGAACTACGACGGCTGCAAGCGAAAGTTTGACGTGAACG 6101024 Query 135765 TGTACGTGA 135773 || ||||| Sbjct 6101025 CGTTCGTGA 6101033 >seq9 Length=6651167 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || ||||| || || || || || Sbjct 535210 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCATCG 535151 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| ||||| || || || |||||||| || || || || ||||| Sbjct 535150 GATACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCGCCAGATCAG 535091 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| ||| | || | ||||| |||||| Sbjct 535090 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 535031 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||||| || ||||| | ||| |||| || ||||| Sbjct 535030 ATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGAGGAGGCAT 534981 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || ||||| || || || ||||| Sbjct 534808 CATGCAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTC 534749 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||| |||| ||||| || || || ||||| || || || || || ||||| Sbjct 534748 GGATACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCA 534689 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| ||| | || | ||||| ||||| Sbjct 534688 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAA 534629 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||||||| | || |||||| | || | || ||||| Sbjct 534628 CATCCAGAAGGAGTCGACCCTCCACTTGGTTCTTCGGCTTCGCGGTGG 534581 >seq4 Length=15719670 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||| ||||| || || || || Sbjct 4750782 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 4750723 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || ||| || || ||||| || || || || || ||||| Sbjct 4750722 GATACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCGCCGGATCAG 4750663 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || | ||||||||||| Sbjct 4750662 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAAT 4750603 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | ||| |||| | || |||| ||||| Sbjct 4750602 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 4750556 >seq1 Length=30017264 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||||||||||| ||| | || || || || ||||| || || Sbjct 15159777 CATGCAAATCTTCGTCAAGACTCTGACCGGAAAGACCATCACGCTGGAGGTGGAGCCATC 15159718 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || ||||| || || |||||||| || || ||||| Sbjct 15159717 GGACACCATCGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCGGATCA 15159658 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||| || || ||||||| | ||| | || || ||||| Sbjct 15159657 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTGTCAGACTACAA 15159598 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| || | || |||| | ||| |||| || ||| Sbjct 15159597 TATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGTCTGCGTGGAGGC 15159549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916714691200