Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq12 96.9 3e-15 >seq12 Length=3202847 Score = 96.9 bits (106), Expect = 3e-15 Identities = 225/337 (67%), Gaps = 2/337 (1%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || |||||||| | || |||| | ||| || || |||||||| || || || || Sbjct 246608 GACGTGCGCGATCATATGGGTAAGCAACGAGTAGCTTGCGATGTTGAATGGTACACCCAA 246667 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||| || ||||||||||||| | |||||| || | || || || | || | || Sbjct 246668 GCCCACATCGGCCGATCGTTGATACATCTGGCATGATAATTCTCCGTTATCAACAAAAAA 246727 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 ||| | | ||||| || || || ||||| ||||| ||| ||| ||||| || Sbjct 246728 TTGAGCCAAGCAATGGCAAGGTGGAAGAGCCATATTAGGGATATCGGACGGATTCCAGGC 246787 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-A 6854 || ||| | ||| | | || | ||||| || | ||||||| || | |||| | Sbjct 246788 GCTCATGATGATTCGACGATCGTACGGGTTGTTTTTAATCTTGTCGATTACCT-CTGCAA 246846 Query 6855 GCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGT 6914 | |||||| || || || | || || | | || | || | || ||||||| Sbjct 246847 GTTGGTCCATGCCTTGCCCAGTGTAATCGTCATGGCACGTTTTGTATTTTGCTCCAAAGT 246906 Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 ||| ||| || |||||||| || || ||||| || || Sbjct 246907 GTCGCCATTGAAACCCGTACACAGGCCCCAAATCACC 246943 Score = 96.9 bits (106), Expect = 3e-15 Identities = 225/337 (67%), Gaps = 2/337 (1%) Strand=Plus/Minus Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || || ||||| || || |||||||| || ||| |||||||||| || | || | Sbjct 246943 GGTGATTTGGGGCCTGTGTACGGGTTTCAATGGCGACACTTTGGAGCAAAATACAAAACG 246884 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTT 34512 || | | || || | || || || |||||| || |||| | || ||||||| | Sbjct 246883 TGCCATGACGATTACACTGGGCAAGGCATGGACCAACTTGCAG-AGGTAATCGACAAGAT 246825 Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572 || ||||| | || | | ||| | ||| |||| ||||| ||| ||| |||| Sbjct 246824 TAAAAACAACCCGTACGATCGTCGAATCATCATGAGCGCCTGGAATCCGTCCGATATCCC 246765 Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCT 34632 | ||||| || || || ||||| | | ||||| | || | || || || | Sbjct 246764 TAATATGGCTCTTCCACCTTGCCATTGCTTGGCTCAATTTTTTGTTGATAACGGAGAATT 246705 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 || |||||| | ||||||||||||| || |||| || || || || |||||||| || Sbjct 246704 ATCATGCCAGATGTATCAACGATCGGCCGATGTGGGCTTGGGTGTACCATTCAACATCGC 246645 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || ||| | |||| || | |||||||| || ||| Sbjct 246644 AAGCTACTCGTTGCTTACCCATATGATCGCGCACGTC 246608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260662983200