Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 181 2e-40 seq1 168 2e-36 seq9 147 5e-30 >seq4 Length=15719670 Score = 181 bits (200), Expect = 2e-40 Identities = 175/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || |||||||| ||||| || || |||||||| || |||| || || Sbjct 15451520 ACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGT 15451461 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||||||||||||| |||||||| || || || || || ||||| | ||| Sbjct 15451460 GCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCC 15451401 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| ||||| |||||||| ||||| ||| || ||||| || Sbjct 15451400 TTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAG 15451341 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||| || || || ||||| || || || || | |||||| || Sbjct 15451340 AGTGATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 15451296 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || ||||| || ||||| || ||||| | || || | ||||| Sbjct 4750571 AGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCC 4750630 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || || | || ||||||||| Sbjct 4750631 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCC 4750690 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| ||||| || ||||| || || ||| || ||||| || || || ||| Sbjct 4750691 TGGATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTC 4750750 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| || || || || | |||||| || Sbjct 4750751 TTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 4750785 >seq1 Length=30017264 Score = 168 bits (186), Expect = 2e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || ||||| ||||||||||| || ||||| || || || | || Sbjct 15159552 TCCACGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGACAG 15159611 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||||||||||||||| || |||||||| || || || || || ||||| | Sbjct 15159612 GGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGAT 15159671 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||| ||||| ||||| |||||||| ||||||||||| || || ||||| Sbjct 15159672 GCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTC 15159731 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| |||||||| || |||||||| || || | ||||| || Sbjct 15159732 CAGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCATGTT 15159779 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 210991 GTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGG 211050 ||||||| || | ||| | |||||||||||||| ||||| |||||||| ||||||| Sbjct 15156914 GTTGTTGATCCGCAGGGATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCGATGG 15156973 Query 211051 TGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCT 211110 |||| || || ||||| || ||||| |||||||| || |||||||| | ||| | | Sbjct 15156974 TGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTAATAAAGATTT 15157033 Query 211111 GCAT 211114 |||| Sbjct 15157034 GCAT 15157037 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||| || || |||||||| || || | || | | || ||||| || ||| Sbjct 15157291 TGGAGAGTGGAATCCTTCTGGATGTTGTAGTCTGACAGAATACGTCTATCTTTCAAATGC 15157350 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 | || ||||| || || || || || ||||| | |||||||| |||| |||||| Sbjct 15157351 ATTCCGCTGAAGACCAGACGCTGGTGATCCGGAGGGATGCCTTCCTTACCCTGAATCTTT 15157410 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||| | ||||||||||| || || ||||| || ||||| |||||||| | Sbjct 15157411 GCCTTCACGATCTCGATGGTGTCCGACGGCTCTACCTCCAGCGTGATGGTCTTTCCGTTC 15157470 Query 211092 AGAGTCTTTACAAA 211105 | ||| || || || Sbjct 15157471 ATAGTTTTGACGAA 15157484 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 210920 GGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGC 210979 ||| || || ||||| || || || | |||| | ||||||||||| | ||| || || Sbjct 15157071 GGATTCCTTCTGGATATTGTAGTCTGATAGGGCACGGCCATCTTCCAGATACTTTCCGGC 15157130 Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCAC 211039 |||| ||| || || | | ||| |||||||| |||| ||||| ||||| Sbjct 15157131 GAAGTAAAGATACTGCTGATACGAAGGCGTGCCTTCCTTAACCTGAATCTTAGCCTTCAC 15157190 Query 211040 GTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTT 211099 | | ||||||||||| || |||||| || || ||||| |||||||| || ||||| || Sbjct 15157191 GATCTCGATGGTGTCCGATGGTTCAACTTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTT 15157250 Query 211100 TACAAACACCTGCA 211113 || || | |||| Sbjct 15157251 GACGAAGATTTGCA 15157264 >seq9 Length=6651167 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||| || || ||||| || |||||||| || || | || || Sbjct 534587 CGAAGCCGAAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 534646 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || |||||||||||||| |||||||| || || || || || || || | ||| Sbjct 534647 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCC 534706 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||| || || || || ||||| ||| Sbjct 534707 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACCTCCAGA 534766 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| || || | |||||| Sbjct 534767 GTGATGGTCTTGCCAGTCAGCGTCTTCACGAAAATCTGCAT 534807 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| | || ||||| || |||||||| || || | || || | ||| || Sbjct 534999 AGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 535058 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || || | ||| || |||||| Sbjct 535059 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCTTTGTCC 535118 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| || || || || ||||| |||||||| ||| Sbjct 535119 TGGATCTTGGCCTTGACGTTCTCGATCGTATCCGATGGCTCGACCTCCAGAGTGATGGTC 535178 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || || || || ||||| || || | ||||||| |||| Sbjct 535179 TTGCCAGTCAGCGTCTTCACGAAGATCTGCATTCTATG 535216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147395993150