Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 4e-14 seq4 84.2 2e-11 >seq9 Length=6651167 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||||| | || | ||||| || | || ||| || || || || || || Sbjct 534980 CATGCCTCCTCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTC 535039 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| |||| || ||||| ||||| || || || ||||||||||| || | Sbjct 535040 GGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 535099 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | |||||||||| ||| || |||| || | | |||||| | ||| Sbjct 535100 CGGGATTCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGATGGCTC 535159 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || |||||||| || || ||||| ||||| Sbjct 535160 GACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 535210 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || || |||| || || ||| |||| || Sbjct 534599 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 534658 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || ||||||||||| || | || | | ||| |||||| | Sbjct 534659 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 534718 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | |||||| || ||| || |||| ||||| | || Sbjct 534719 ATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTG 534778 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||||||| || || || || ||||| Sbjct 534779 CCAGTCAGCGTCTTCACGAAAATCTGCAT 534807 >seq4 Length=15719670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| ||| || || ||| || || ||||| ||||||| || || || | Sbjct 4750567 GCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCC 4750626 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || ||||||||||| || | || | | ||| || Sbjct 4750627 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTT 4750686 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || || | || | | |||||| | ||| || || | || || Sbjct 4750687 GTCCTGGATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAAT 4750746 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || ||||| || ||||| || ||||| |||||||| Sbjct 4750747 GGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 4750785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543977123030