Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq9 114 9e-21 seq4 113 3e-20 >seq9 Length=6651167 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || ||||||||| ||||| || || || || || || || |||||||| || || || | Sbjct 535214 TAGAATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCC 535155 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || | | || || || |||||||| || | |||||||| Sbjct 535154 ATCGGATACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCGCCAGA 535095 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || |||||||| || ||||| |||| ||||||| | ||| || Sbjct 535094 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTA 535035 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| || || ||||| || || || || || | | |||||||||| Sbjct 535034 CAACATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGAGGAGG 534984 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || || || |||||||| || || || | || Sbjct 534807 ATGCAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 534748 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || || ||||| || || | ||||||||||| Sbjct 534747 GATACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 534688 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || ||||| |||| ||||||| | ||| |||||| Sbjct 534687 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 534628 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || ||||| || | || || ||| | || | || || ||| Sbjct 534627 ATCCAGAAGGAGTCGACCCTCCACTTGGTTCTTCGGCTTCGCGGTGGA 534580 >seq4 Length=15719670 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||| ||||| || ||||| |||||||| || || || || Sbjct 15451296 AACATGCAGATTTTCGTGAAAACACTCACCGGCAAAACCATCACTCTTGAGGTCGAGCCC 15451355 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | |||| | || || || ||||| ||||| | || || ||| Sbjct 15451356 TCGGACACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCGGAT 15451415 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || |||||||| || ||||| || | |||||| | || ||| Sbjct 15451416 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTAC 15451475 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || || ||||| Sbjct 15451476 AACATCCAGAAGGAATCCAC 15451495 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||||||||| || || || || || || || || || Sbjct 4750785 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 4750726 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || ||| | || | ||| || ||||| || ||| | ||||| || Sbjct 4750725 TCGGATACGATCGAGAATGTGAAGGC-AAAGATCCAGGACAAGGAGGGTATCCCGCCGGA 4750667 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || |||||||| || ||||| || | ||||| | |||||| Sbjct 4750666 TCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTA 4750607 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || || || ||||| || Sbjct 4750606 CAATATCCAGAAGGAGTCGAC 4750586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008322957480