Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 131 1e-25 >seq2 Length=22738934 Score = 131 bits (144), Expect = 1e-25 Identities = 465/717 (65%), Gaps = 20/717 (3%) Strand=Plus/Plus Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 ||||| || || || || || || || ||||| ||| ||||||||||| || || | Sbjct 19671860 AGCAACCGATCCGCCACGAACTCAATGTACTGCGACATCAGTTCGCAGTTCATGCCGAGC 19671919 Query 4434 AATCTC-ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 | | || || || || || | |||| ||||| || || || || || || ||| Sbjct 19671920 A-TGTCGACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCACGACCGCATCGCGGAT 19671978 Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGC 4552 || || | | || || || ||||| | || | || | |||| | || || Sbjct 19671979 GATCTCCGTCACGCGCTCCTTCGACGGTTTCTGCACCAGATACCGGAACATCAGGCAGGC 19672038 Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGG 4611 ||| ||||| |||| || ||||| | || | ||||| ||||| || ||||| | || | Sbjct 19672039 AAAGTCACAGTGCAGTCCCTCGTCGC-GCGAGATCAGCTCGTTCGAGAACGTCAGCCCCG 19672097 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||||| || | ||| || ||||| || || || ||||| ||| |||||| |||| Sbjct 19672098 GCATTAGGCCGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCACTAAAGAAGATGC 19672157 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT--CTTTA-A 4728 | || || || || ||||| || | || ||| || | |||| || | || | | Sbjct 19672158 CCTCGACTGCAGCGAACGCAACCACACGCTCCCCAAA---GTTGGCCTTCTTGCTGGAGA 19672214 Query 4729 TCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA 4788 |||| || | ||||||| || || ||||| |||||||| | || | || ||||| | Sbjct 19672215 TCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGA 19672274 Query 4789 ATAATTTACT-----TTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 | | | ||| | ||| ||||| | || || ||||| || || || || Sbjct 19672275 ACAGAT-ACTCCCGCTCCTTC----GGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTA 19672329 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 |||||| || | || || || ||||||||||| ||||| ||||| | || || || Sbjct 19672330 CATTTCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGT 19672389 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 || || || || | | || | || || | || || ||||| |||||||| ||| Sbjct 19672390 CACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTTACGATACCGTCCGAGGC 19672449 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 || || || || | || || || || || | | ||| || || || || ||| Sbjct 19672450 GGCGAAGAAGGCAAGCACGTGCGAGATGAAATGACGCTCGCTTGGTTTGAGCGATTCCCA 19672509 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 || || || || | | || || ||||| || ||||| || || || ||||| Sbjct 19672510 GTCTTTCATGTCCTTCGACAGGTCCACCTCTTCCACCGTCCAGAAGGAAGCCTCCGC 19672566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047986553230