Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 156 3e-33 seq4 138 8e-28 seq9 125 5e-24 >seq1 Length=30017264 Score = 156 bits (172), Expect = 3e-33 Identities = 165/215 (77%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || ||| |||||| ||||| ||||| || | || || | || || Sbjct 15159567 CACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTC 15159626 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| |||||||||||| | ||| | |||||||| ||| Sbjct 15159627 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTATCCTG 15159686 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | |||| | |||||||| | | |||||||||| ||| || |||| Sbjct 15159687 AATCTTAGCCTTC-ACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCT 15159745 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||| || || ||||| ||||||||||||||| || Sbjct 15159746 TTCCGGTCAGAGTCTTGACGAAGATTTGCATGTTG 15159780 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||| ||||| || | || || | || ||||| | ||| ||||| ||| Sbjct 15157075 TCCTTCTGGATATTGTAGTCTGATAGGGCACGGCCATCTTCCAGATACTTTCCGGCGAAG 15157134 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 | | |||||||| |||||| |||||||| || ||||| ||||| | Sbjct 15157135 TAAAGATACTGCTGATACGAAGGCGTGCCTTCCTTAACCTGAATCTTAGCCTTCACGATC 15157194 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | ||| || |||| ||| || |||||||| || || || || ||| Sbjct 15157195 TCGATGGTGTCCGATGGTTCAACTTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTGACG 15157254 Query 44327 AAGATTTGCA 44336 |||||||||| Sbjct 15157255 AAGATTTGCA 15157264 >seq4 Length=15719670 Score = 138 bits (152), Expect = 8e-28 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||| | |||||||||||| ||| ||||| ||||||||||| || | || ||| Sbjct 15451516 AGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGG 15451457 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| ||||| ||||||| |||||||||||| | ||| | |||||| Sbjct 15451456 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCCTTCC 15451397 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||||| || | || ||||| | || || ||||| | || Sbjct 15451396 TTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGAGTG 15451337 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || || ||||| || |||||||| || |||||| Sbjct 15451336 ATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 15451298 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||| ||||| || |||||| ||||| |||||||||| || ||| | || || Sbjct 4750573 CACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGGCCATCCTC 4750632 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||| | |||||||||||| | || | ||| ||||| ||| Sbjct 4750633 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTG 4750692 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | || || || | || || ||||| | ||||| ||||| Sbjct 4750693 GATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 4750752 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || |||||||| ||||| Sbjct 4750753 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 4750782 >seq9 Length=6651167 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| ||||||||||| |||| || ||| |||| ||| Sbjct 534599 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 534658 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||||| |||||||||||||| || | || ||||| ||| Sbjct 534659 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 534718 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | | |||| | || || || | | || ||||||| || || ||||| Sbjct 534719 ATCTT-GGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTT 534777 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || ||||||||||| || |||||| Sbjct 534778 GCCAGTCAGCGTCTTCACGAAAATCTGCATG 534808 Score = 123 bits (136), Expect = 2e-23 Identities = 173/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | | |||| ||| | || |||||| ||||||||||| || Sbjct 534980 CATGCCTCCTCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTC 535039 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| ||||||||||| ||||| ||||||| |||||||||||||| Sbjct 535040 GGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 535099 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || || || ||| ||||| || | | |||| | || || || | | | Sbjct 535100 CGGGATTCCCTCTTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATCGTATCCGATGGCT 535158 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAA 44345 | ||||||| || || ||||| || || || |||||||||||||| ||||| | |||| Sbjct 535159 CGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATTCTATGAA 535218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989039911270