Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17]
310 sequences; 183,103,254 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq4 165 2e-35
seq1 159 8e-34
seq9 141 2e-28
>seq4
Length=15719670
Score = 165 bits (182), Expect = 2e-35
Identities = 160/206 (78%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| ||||| || ||||| ||||| || ||||| || ||| |||
Sbjct 15451302 CAGATTTTCGTGAAAACACTCACCGGCAAAACCATCACTCTTGAGGTCGAGCCCTCGGAC 15451361
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||| |||||||| ||||||||||||||||| |||||
Sbjct 15451362 ACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCGGATCAGCAG 15451421
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || ||||| | ||||| | || || ||| ||
Sbjct 15451422 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAACATC 15451481
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || || || ||
Sbjct 15451482 CAGAAGGAATCCACCCTTCACCTGGT 15451507
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| ||||| || || || || ||||| ||||| || ||| ||
Sbjct 4750779 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 4750720
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || || |||||| |||||||| || || ||||| ||||| |||||
Sbjct 4750719 ACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCGCCGGATCAGCAG 4750660
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || ||||| | || || ||||||| || ||
Sbjct 4750659 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAATATC 4750600
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 4750599 CAGAAGGAGTCGACCCTTCATCTGGT 4750574
>seq1
Length=30017264
Score = 159 bits (176), Expect = 8e-34
Identities = 159/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||||| || ||||| || ||||| || |||||||| || |||
Sbjct 15159773 CAAATCTTCGTCAAGACTCTGACCGGAAAGACCATCACGCTGGAGGTGGAGCCATCGGAC 15159714
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| || ||||||||||| || ||||| ||||||||||| |||||
Sbjct 15159713 ACCATCGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCGGATCAGCAG 15159654
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||||||||| ||||| |||||||| | || || | || || || ||
Sbjct 15159653 CGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTGTCAGACTACAATATC 15159594
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 15159593 CAGAAGGAGTCCACTCTCCACCTGGT 15159568
Score = 114 bits (126), Expect = 3e-20
Identities = 146/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| |||||| | | ||||| || ||||| || ||||| || || |||
Sbjct 15157490 CAAATCTTCGTCAAAACTATGAACGGAAAGACCATCACGCTGGAGGTAGAGCCGTCGGAC 15157431
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||| ||| || ||||||||||| || ||||| ||||||||||| || ||
Sbjct 15157430 ACCATCGAGATCGTGAAGGCAAAGATTCAGGGTAAGGAAGGCATCCCTCCGGATCACCAG 15157371
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || | ||||| || | | ||| | || || ||| ||
Sbjct 15157370 CGTCTGGTCTTCAGCGGAATGCATTTGAAAGATAGACGTATTCTGTCAGACTACAACATC 15157311
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| || || || || || |||
Sbjct 15157310 CAGAAGGATTCCACTCTCCAT 15157290
Score = 105 bits (116), Expect = 2e-17
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| |||||||| || ||||| || ||||| || || || ||| || |||
Sbjct 15157262 CAAATCTTCGTCAAAACTCTGACCGGAAAGACCATCACGCTGGAAGTTGAACCATCGGAC 15157203
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||| ||| || |||||||||| || ||||| | ||| || | |||||
Sbjct 15157202 ACCATCGAGATCGTGAAGGCTAAGATTCAGGTTAAGGAAGGCACGCCTTCGTATCAGCAG 15157143
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| |||||||||||| | || |||||||| | | || | || || || ||
Sbjct 15157142 TATCTTTACTTCGCCGGAAAGTATCTGGAAGATGGCCGTGCCCTATCAGACTACAATATC 15157083
Query 178104 CAAAAAGAATC 178114
|| || |||||
Sbjct 15157082 CAGAAGGAATC 15157072
Score = 104 bits (114), Expect = 6e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || | || ||||| || ||||| || ||||| || |||||||| || |||
Sbjct 15157034 CAAATCTTTATTAAGACTCTGACCGGAAAGACCATCACGCTGGAGGTGGAGCCATCGGAC 15156975
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| || |||||||||||||| ||||| |||||| |||| || |||
Sbjct 15156974 ACCATCGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATCCCTGCGGATCAACAA 15156915
Query 178044 CGACTTATCTTCGCCGGAAA 178063
| || || | | ||||||
Sbjct 15156914 CATCTGATTTACAACGGAAA 15156895
Score = 89.7 bits (98), Expect = 1e-12
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| ||||| || |||| || ||||||| || ||||||||||||||||| ||
Sbjct 15157949 ACCGGAAAGACCATCAGGCTGCAGGTGGAGCCATCTGACACCATCGAGAACGTGAAGGCT 15157890
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||||||||| |||||||| ||||| | ||| | ||| || || |||| ||| |||
Sbjct 15157889 AAGATTCAGGATAAAGAAGGCATCCCGCGGGATCTGCAGCGTCTGATCTACGCAGGACTG 15157830
Query 178065 CAGCTCGAAGAT 178076
|||| ||||||
Sbjct 15157829 GAGCTGGAAGAT 15157818
>seq9
Length=6651167
Score = 141 bits (156), Expect = 2e-28
Identities = 157/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || || || ||||| || ||||| || || ||
Sbjct 534804 CAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCGGAT 534745
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||||||||| ||||| |||||||| || |||||||| || || |||||
Sbjct 534744 ACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 534685
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || || ||| | ||||| |||| || ||| ||
Sbjct 534684 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATC 534625
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || || || || || || |||| ||
Sbjct 534624 CAGAAGGAGTCGACCCTCCA-CTTGGTT 534598
Score = 141 bits (156), Expect = 2e-28
Identities = 155/205 (76%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || || ||||| || ||||| || || ||
Sbjct 535207 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCATCGGAT 535148
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||||||||| ||||| ||||||||||| |||||||| || || |||||
Sbjct 535147 ACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCGCCAGATCAGCAG 535088
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || || ||| | ||||| |||| || ||| ||
Sbjct 535087 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATC 535028
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || |||| ||||
Sbjct 535027 CAGAAGGAGTCGACCTTGCA-CTTG 535004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203726418930140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |