Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17] 310 sequences; 183,103,254 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 165 2e-35 seq1 159 8e-34 seq9 141 2e-28 >seq4 Length=15719670 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || ||||| ||||| || ||||| || ||| ||| Sbjct 15451302 CAGATTTTCGTGAAAACACTCACCGGCAAAACCATCACTCTTGAGGTCGAGCCCTCGGAC 15451361 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| |||||||| ||||||||||||||||| ||||| Sbjct 15451362 ACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCGGATCAGCAG 15451421 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | ||||| | || || ||| || Sbjct 15451422 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAACATC 15451481 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || || || Sbjct 15451482 CAGAAGGAATCCACCCTTCACCTGGT 15451507 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || || || ||||| ||||| || ||| || Sbjct 4750779 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 4750720 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||| |||||||| || || ||||| ||||| ||||| Sbjct 4750719 ACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCGCCGGATCAGCAG 4750660 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | || || ||||||| || || Sbjct 4750659 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAATATC 4750600 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 4750599 CAGAAGGAGTCGACCCTTCATCTGGT 4750574 >seq1 Length=30017264 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || ||||| || ||||| || |||||||| || ||| Sbjct 15159773 CAAATCTTCGTCAAGACTCTGACCGGAAAGACCATCACGCTGGAGGTGGAGCCATCGGAC 15159714 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||||||||| || ||||| ||||||||||| ||||| Sbjct 15159713 ACCATCGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCGGATCAGCAG 15159654 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| |||||||| | || || | || || || || Sbjct 15159653 CGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTGTCAGACTACAATATC 15159594 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 15159593 CAGAAGGAGTCCACTCTCCACCTGGT 15159568 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | | ||||| || ||||| || ||||| || || ||| Sbjct 15157490 CAAATCTTCGTCAAAACTATGAACGGAAAGACCATCACGCTGGAGGTAGAGCCGTCGGAC 15157431 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||| ||| || ||||||||||| || ||||| ||||||||||| || || Sbjct 15157430 ACCATCGAGATCGTGAAGGCAAAGATTCAGGGTAAGGAAGGCATCCCTCCGGATCACCAG 15157371 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || | ||||| || | | ||| | || || ||| || Sbjct 15157370 CGTCTGGTCTTCAGCGGAATGCATTTGAAAGATAGACGTATTCTGTCAGACTACAACATC 15157311 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 15157310 CAGAAGGATTCCACTCTCCAT 15157290 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||||| || ||||| || ||||| || || || ||| || ||| Sbjct 15157262 CAAATCTTCGTCAAAACTCTGACCGGAAAGACCATCACGCTGGAAGTTGAACCATCGGAC 15157203 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||| ||| || |||||||||| || ||||| | ||| || | ||||| Sbjct 15157202 ACCATCGAGATCGTGAAGGCTAAGATTCAGGTTAAGGAAGGCACGCCTTCGTATCAGCAG 15157143 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| |||||||||||| | || |||||||| | | || | || || || || Sbjct 15157142 TATCTTTACTTCGCCGGAAAGTATCTGGAAGATGGCCGTGCCCTATCAGACTACAATATC 15157083 Query 178104 CAAAAAGAATC 178114 || || ||||| Sbjct 15157082 CAGAAGGAATC 15157072 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || | || ||||| || ||||| || ||||| || |||||||| || ||| Sbjct 15157034 CAAATCTTTATTAAGACTCTGACCGGAAAGACCATCACGCTGGAGGTGGAGCCATCGGAC 15156975 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||||||||||| ||||| |||||| |||| || ||| Sbjct 15156974 ACCATCGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATCCCTGCGGATCAACAA 15156915 Query 178044 CGACTTATCTTCGCCGGAAA 178063 | || || | | |||||| Sbjct 15156914 CATCTGATTTACAACGGAAA 15156895 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || |||| || ||||||| || ||||||||||||||||| || Sbjct 15157949 ACCGGAAAGACCATCAGGCTGCAGGTGGAGCCATCTGACACCATCGAGAACGTGAAGGCT 15157890 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||||||||| |||||||| ||||| | ||| | ||| || || |||| ||| ||| Sbjct 15157889 AAGATTCAGGATAAAGAAGGCATCCCGCGGGATCTGCAGCGTCTGATCTACGCAGGACTG 15157830 Query 178065 CAGCTCGAAGAT 178076 |||| |||||| Sbjct 15157829 GAGCTGGAAGAT 15157818 >seq9 Length=6651167 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| || ||||| || || || Sbjct 534804 CAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCGGAT 534745 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| |||||||| || |||||||| || || ||||| Sbjct 534744 ACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 534685 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || ||| | ||||| |||| || ||| || Sbjct 534684 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATC 534625 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 534624 CAGAAGGAGTCGACCCTCCA-CTTGGTT 534598 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || ||||| || || || Sbjct 535207 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCATCGGAT 535148 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| ||||||||||| |||||||| || || ||||| Sbjct 535147 ACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCGCCAGATCAGCAG 535088 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || ||| | ||||| |||| || ||| || Sbjct 535087 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATC 535028 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 535027 CAGAAGGAGTCGACCTTGCA-CTTG 535004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726418930140