Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20farauti_20[genbank_20GCA_5F000473445.2_202014-01-17]
310 sequences; 183,103,254 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq9 132 4e-26
seq1 132 4e-26
seq4 122 8e-23
>seq9
Length=6651167
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | |||| || || || ||||||||| ||||| ||||||||
Sbjct 534581 CCACCGCGAAGCCGAAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 534640
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || ||||||||||||||||| ||||| ||||| || || | ||
Sbjct 534641 AGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 534700
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | |||||||||| ||| || ||| | | | || || || ||| |||
Sbjct 534701 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACC 534760
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| || || || || || ||||||||||| |||||||||||||||
Sbjct 534761 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAAATCTGCATG 534808
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||| |||| || ||||||||| ||||| ||||||||
Sbjct 534983 GCCTCCTCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 535042
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| || ||||||||||||||||| ||||| ||||| || || | ||
Sbjct 535043 CAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 535102
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
| | ||| |||||| ||| || ||| | | | || || | ||| ||
Sbjct 535103 GATTCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGATGGCTCGAC 535162
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || || ||||||||||| ||||| ||||||||
Sbjct 535163 CTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 535210
>seq1
Length=30017264
Score = 132 bits (146), Expect = 4e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||||| || || ||| ||||||||| || || ||||| ||
Sbjct 15159549 GCCTCCACGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGA 15159608
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||| || | || || |||||||| |||||||| ||||| ||||| || |||| ||
Sbjct 15159609 CAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGG 15159668
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || ||||| ||| ||| | || || | ||| | | ||||| | |||||
Sbjct 15159669 GATGCCTTCCTTATCC-TGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCA 15159727
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||| ||| || || || || ||||| ||||| ||||| || ||||||||
Sbjct 15159728 CCTCCAGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCATGTT 15159779
>seq4
Length=15719670
Score = 122 bits (134), Expect = 8e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | ||||||||| || || ||||||||| || || || |||||
Sbjct 4750556 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGAC 4750615
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || ||||||||||||||||| || || ||||| || |||| ||
Sbjct 4750616 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 4750675
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | |||||||||| ||| ||| ||||| | | || || | ||| |||
Sbjct 4750676 ATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 4750735
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| | || || || |||||||| || || || ||||| |||||||| ||
Sbjct 4750736 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 4750785
Score = 118 bits (130), Expect = 1e-21
Identities = 171/240 (71%), Gaps = 1/240 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||| || || ||| |||||||| ||||| ||||| ||
Sbjct 15451525 CCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAC 15451466
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || ||||||||||||||||| ||||| ||||| || |||| ||
Sbjct 15451465 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGG 15451406
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | ||||||||| ||| || ||||| | ||||| | ||| |||
Sbjct 15451405 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACC 15451346
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGATGGAT 41875
|| | || || ||||| || || || || || ||||||||||||||||| || | ||||
Sbjct 15451345 TCAAGAGTGATGGTTTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT-TCTACGGAT 15451287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462302208572000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |