Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq8951 165 8e-36 seq14080 89.7 5e-13 >seq8951 Length=23152 Score = 165 bits (182), Expect = 8e-36 Identities = 464/705 (66%), Gaps = 8/705 (1%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA-GTCGTA 16094 ||| || || || || || || || |||| | ||||| || || || | | |||| | Sbjct 2279 ATCCGCCACGAACTCAATGTACTGCGACATCAGTTCGCAGTTCATGCCGAGCATGTCG-A 2337 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | || || || || || | |||| ||||| ||||| ||||| || |||||| || | Sbjct 2338 CTGGCAGTGCCTTGGTCAGGAATTCCTGTTCGATCACGACCGCATCGCGAATGATCTCCG 2397 Query 16155 TGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | | || | ||| ||||| | || || | ||||| || || || ||||| Sbjct 2398 TTACGCGCTCCTTC-GACGGCTTCTGCACCAGATACCGGAACATCAGGCAGGCAAAGTCA 2456 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 || || ||||| ||||| | ||| || ||||| || || || | |||||||||| Sbjct 2457 CAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTCAGCCCTGGCATTAGG 2516 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCTCAA 16331 || || ||||| | |||||| || || ||||| || | | ||| ||| || ||||||| Sbjct 2517 CCGCGCTTCTTCAGCCAGAAAATAGCCGCAAAGCTGCCACTGAA--GAAGATGCCCTCAA 2574 Query 16332 CAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCT 16391 ||| || || || | | |||||| | | | || | || | ||||| ||| Sbjct 2575 CAGCAGCGAACGCAACCACACGTTCCCCAAAGTTGGCCTTCTTGCTGGAGATCCAGTTCA 2634 Query 16392 GTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCT 16451 | |||| ||||| || | |||| || || |||||| || || || |||| | || Sbjct 2635 GCGCCCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGAACAGATACT 2694 Query 16452 CTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTA 16511 | |||| ||| ||| ||||| || ||||| | ||||||||| || | Sbjct 2695 CCCGCTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATTTCGCTATGCA 2754 Query 16512 TGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCA 16571 |||||| || || |||||||| || |||||||| || ||||||| | || || ||| Sbjct 2755 CGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTGCACCTCCT 2814 Query 16572 CGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA 16631 | || || ||| |||| ||||| || ||||||||||| || || || || || | Sbjct 2815 GGCTGAAGCGCTCCACCAGATTCTCGTTTACGATACCGTCCGAGGCGGCGAAGAAGGCAA 2874 Query 16632 ATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTT 16691 || |||| ||||| | ||| || | || | ||||||||| | || | Sbjct 2875 GTACGTGCGAGATGAAGTGACGCTCGCTCGACTTGAGCGATTCCCAATCTTTCATGTCCT 2934 Query 16692 TGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | |||| ||||| ||||| ||||| ||| ||| | |||| Sbjct 2935 TCGATAGGTCCACCTCTTCCACTGTCCAGAAGGAAGCTTCCGCCT 2979 >seq14080 Length=20585 Score = 89.7 bits (98), Expect = 5e-13 Identities = 199/290 (69%), Gaps = 9/290 (3%) Strand=Plus/Minus Query 118930 TCGAATTTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTG 118988 ||| | |||||||| || || || ||||| | |||||||||||| | ||| || || Sbjct 7863 TCGTAGTTCATGTACCGAATTTTGCCAAAAATTTCCCGCTCCTTCCAT-CCCTGATCATG 7805 Query 118989 GAGTCCTGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACT 119047 || || || | | ||| | || || ||||| || || ||||| || || | ||| Sbjct 7804 GATGCCGGCAATGGACCACATGCACCCGACGTACCCATTCGGATCGCGCCCATCCAGACT 7745 Query 119048 CGTACTTATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCCA 119105 ||| |||||| | ||||| | || || | || ||| || || || || |||| Sbjct 7744 -GTAGCGATCGTTCAGATAGAT--GGCCGTTTCAAGCGCTTCCTCGGGCGTTTTCGTCCA 7688 Query 119106 TTCCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAAT 119165 || |||||||| || ||||| ||||| || | |||||||||| || |||| || | Sbjct 7687 CTCTAGTATTTTCTTCGCCCAATACATGCGCAGGAACCCGTGCATCTTGGCCTCCTTCAC 7628 Query 119166 CATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACGGGCGTGTT 119215 | ||| || || || | |||||| || |||||| || |||| |||| Sbjct 7627 TAGCTGCAGCTGGGCTGCGTTCCACAGGTCATCGTGGGTGTGGGC-TGTT 7579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511322300659240