Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq6044 114 1e-20 seq8295 100 2e-16 seq13424 95.1 1e-14 seq14285 91.5 1e-13 seq7907 86.0 5e-12 >seq6044 Length=6192 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||| | || |||||||| || || || || || | | Sbjct 4501 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGAC 4442 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| ||||| || | || || | |||||| ||| || Sbjct 4441 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 4382 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | ||| ||||| |||||| Sbjct 4381 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 4322 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || | |||||||||||| || || | |||||||| || || ||||| ||||| Sbjct 4321 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAA 4269 >seq8295 Length=14778 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || || || || | |||||||| || | ||||| ||||| || ||||| |||||| Sbjct 4914 TTACCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCC 4973 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | ||| || || | || |||||||||||||| || | || || | |||||| ||| Sbjct 4974 GACAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGA 5033 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | || |||||||| |||||| ||||| | ||| || || ||||| Sbjct 5034 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAAGGCTCG 5093 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||||||||| | ||||| || || || ||||| Sbjct 5094 ACCTCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 5143 >seq13424 Length=49246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || |||| ||| |||| ||||| || |||||||| || ||||| ||||| Sbjct 219 GTTTCCACCGCGAAGCCGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTC 160 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||| || | ||||||||||||| ||||| || | || || | |||||| || Sbjct 159 GGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 100 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | || |||||||| |||||| || || | ||| ||||| ||||| Sbjct 99 CGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTC 40 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGT 21151 |||| || ||||||||||| || Sbjct 39 GACCTCCAGAGTGATGGTCTTGCCAGT 13 >seq14285 Length=18903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | |||||||| || | |||||||||||| || || || ||||| | | Sbjct 206 CCTCCTCGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAC 147 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| || || || | || || | |||||| || || Sbjct 146 AGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 87 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || ||||| ||||| | ||| || || |||||| Sbjct 86 ATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACC 27 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 |||| || |||||||| ||||| Sbjct 26 TCCAGCGTGATGGTCTTTCCGGT 4 >seq7907 Length=245248 Score = 86.0 bits (94), Expect = 5e-12 Identities = 123/173 (71%), Gaps = 8/173 (5%) Strand=Plus/Minus Query 29041 CCGCTGCACAAAGTCGCGGCCCTTGACGAGCAGCACGTACTCGCAGCGGTCGTACCAGCG 29100 |||||| | || ||||||||||| | | | | | || | ||| || ||||||| Sbjct 241390 CCGCTGTATGAACTCGCGGCCCTTCATCAACTGAAGATAGTGGCAATTGTTGTACCAGAT 241331 Query 29101 GGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCA 29160 ||||| |||| ||||||| | ||||| | ||||| |||||||| || ||| | |||| Sbjct 241330 CGCGTGCTGCTCCCACGGCTCATCGTCTTGCTCCCAGTCCTTCAGCCCACCGCCACAGCT 241271 Query 29161 AAAGCAC----CGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCG 29209 ||||||| |||| ||||| || || ||||| || || ||||| ||| Sbjct 241270 AAAGCACTTGACGCG----GTCGCTCTTTCCGGTGTAGAAAAAGCCGGCATCG 241222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422185057486412