Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8951 495 4e-135 seq6044 136 4e-27 seq8295 131 2e-25 seq5453 118 1e-21 seq13424 107 2e-18 seq14285 93.3 4e-14 >seq8951 Length=23152 Score = 495 bits (548), Expect = 4e-135 Identities = 546/722 (76%), Gaps = 4/722 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || |||||||| || || ||||||||||| || ||||||| || || | Sbjct 2979 AGGCGGAAGCTTCCTTCTGGACAGTGGAAGAGGTGGACCTATCGAAGGACATGAAAGATT 2920 Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||| |||| || | |||||| || |||||| |||||| || ||||| |||||| Sbjct 2919 GGGAATCGCTC-AAGTCGAGCGAGCGTCACTTCATCTCGCACGTACTTGCCTTCTTCGCC 2861 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 ||| ||||| ||||| |||||||||||||| ||||| ||| ||||||||||||||| Sbjct 2860 GCCTCGGACGGTATCGTAAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGGTG 2801 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | ||||| || ||||||||||| |||||||| || |||||||||||||| |||||| Sbjct 2800 ACGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCATAGCGAAATG 2741 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAAC 116953 || ||| || |||||||||||| | ||| || ||||| | | |||| ||| Sbjct 2740 TACTCGCTGCTGATCGACACGTACATACGCGACCCGAAGGAGCGGGAGTATCTGTTCAAC 2681 Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 || ||||| ||| |||||||||| || |||||||||| ||||||||| ||||||| || Sbjct 2680 GCGATCGAAACGCTGCCGTGCGTAAAGAAGAAGGCCGACTGGGCGCTGAACTGGATCTCC 2621 Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073 ||| ||||| ||| || || || |||| || ||||| || || |||||| ||||| Sbjct 2620 AGCAAGAAGGCCAACTTTGGGGAACGTGTGGTTGCGTTCGCTGCTGTTGAGGGCATCTTC 2561 Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 || ||||| || || || || || ||||| ||||| |||||||| ||||| || ||| Sbjct 2560 TTCAGTGGCAGCTTTGCGGCTATTTTCTGGCTGAAGAAGCGCGGCCTAATGCCAGGGCTG 2501 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193 || ||| |||||||| ||||| | |||||||| ||||| || ||||||||||| || Sbjct 2500 ACGTTCTCGAACGAGCTGATCTCGCGCGACGAGGGACTGCACTGTGACTTTGCCTGCCTG 2441 Query 117194 CTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGAC 117253 ||||| | || |||||||| ||| || |||||| | ||||||| | ||| Sbjct 2440 ATGTTCCGGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTAACGGAGATCATTCGCGAT 2381 Query 117254 GCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTC-TGCTGGGACT 117312 ||||||| ||||| ||| ||||| ||| | || ||||| || || | |||| || | Sbjct 2380 GCGGTCGTGATCGAACAGGAATTCCTGACCAAGGCACTGCCAGT-CGACATGCTCGGCAT 2322 Query 117313 CAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCT 117372 || |||||| ||||||||| ||||| |||||||| || || || ||||||| ||||| Sbjct 2321 GAACTGCGAACTGATGTCGCAGTACATTGAGTTCGTGGCGGATCGGTTGCTGCTGGAGCT 2262 Query 117373 GG 117374 || Sbjct 2261 GG 2260 >seq6044 Length=6192 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || ||||| || Sbjct 4272 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 4331 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| || || | ||||| ||||| ||||| |||| Sbjct 4332 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGAT 4391 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| ||| ||||| |||||||| || | |||||||| ||| ||| Sbjct 4392 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGATTAC 4451 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||||||| | || || ||||| ||| | ||| || | || || Sbjct 4452 AATATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 4501 >seq8295 Length=14778 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| ||||| |||||||| | || ||||| | | Sbjct 5143 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCG 5084 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || || | ||||| ||||| ||||| |||| ||| Sbjct 5083 GACACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCAG 5024 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| |||||||||||||| || | ||||| || ||||||||| Sbjct 5023 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCCGCACTCTGTCGGACTACAAC 4964 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| |||| || || || ||| Sbjct 4963 ATCCAGAAGGAATCCACCCTTCACCTGGTG 4934 >seq5453 Length=57727 Score = 118 bits (130), Expect = 1e-21 Identities = 147/196 (75%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || ||||| |||||||| | || ||||| ||| Sbjct 57536 AATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTCGA-GCCGT 57594 Query 40749 CG---AC-AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || || | || | |||| |||||| || || | ||||| ||||| ||||| | | Sbjct 57595 CGGATACGATCGAG--AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAG 57651 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| ||||| |||||||| |||| ||||| || ||||| Sbjct 57652 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACT 57711 Query 40865 ACAACATCCAGAAGGA 40880 |||||||||||||||| Sbjct 57712 ACAACATCCAGAAGGA 57727 >seq13424 Length=49246 Score = 107 bits (118), Expect = 2e-18 Identities = 144/195 (74%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG---AC-AGCGT 40757 || || || || || ||||| |||||||| | || ||||| ||| || || | || Sbjct 1 GTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTCGA-GCCGTCGGATACGATCGA 59 Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| |||||| || || | ||||| ||||| ||||| | || ||||| || || Sbjct 60 G--AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCT 116 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| |||||||| |||| ||||| || |||||||||||||||||| Sbjct 117 GATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAA 176 Query 40878 GGAGGCCACGCTGCA 40892 |||| | || |||| Sbjct 177 GGAGTCGACCTTGCA 191 >seq14285 Length=18903 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG-ACAGCGTGCA-AACGCTCA 40768 || || || || |||||||| | || || || |||| || ||| | | | |||| | | Sbjct 1 CTGACCGGAAAGACCATCACGCTGGAGGTGGA-GCCATCGGACACCATCGAGAACG-TGA 58 Query 40769 AGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGG 40828 ||| || |||| || || || |||||||| | || ||||| || || |||| ||| | Sbjct 59 AGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGATCAGCAGCGTCTGATCTTCGCCG 118 Query 40829 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGC 40888 | || |||||||| || | || ||||| |||||||| |||||||||||| |||| | Sbjct 119 GAAAGCAGCTGGAAGATGGCCGTACCCTGTCAGACTACAATATCCAGAAGGAGTCCACTC 178 Query 40889 TGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | || || ||| | || || | || ||| Sbjct 179 TCCACCTGGTGCTCCGTCTGCGAGGAGGC 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515126415462320