Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5453 123 2e-23 seq13424 118 7e-22 seq6044 118 7e-22 seq8295 116 2e-21 seq14285 82.4 5e-11 >seq5453 Length=57727 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| || |||| |||| ||||||||| ||||| Sbjct 57727 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 57668 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || |||||||| || | |||| | | ||||||||| ||||| ||| | | Sbjct 57667 ATCAGACGCTGCTGATCTGGCGGG-ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 57609 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| ||| | || ||||| |||| |||||||| ||||| || ||||| ||||| Sbjct 57608 CTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCAC 57549 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 57548 GAAGATCTGCAT 57537 >seq13424 Length=49246 Score = 118 bits (130), Expect = 7e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| |||| || |||| ||| || || || ||||| |||||||||||||| Sbjct 216 TCCACCGCGAAGCCGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 157 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 ||| || |||| |||| ||||||||| ||||| || || |||||||| || | ||| Sbjct 156 CAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 97 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | ||||||||| ||||| ||| | | | |||| ||| | || |||| Sbjct 96 G-ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGA 38 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| |||||||| ||||| || ||||| ||||| Sbjct 37 CCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCAC 1 >seq6044 Length=6192 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||| || | || || ||||| || ||||| |||||| Sbjct 4501 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGAC 4442 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| ||||||||| ||||| ||||| |||||||| || | |||| Sbjct 4441 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 4382 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | |||| ||| | | ||||| Sbjct 4381 -ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 4323 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || ||||| || || ||||| ||||| || |||||||||||| Sbjct 4322 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATC 4274 >seq8295 Length=14778 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || ||| ||||| ||||||||||| ||||| ||| | || Sbjct 4932 AGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCT 4991 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| ||||| ||||| || || |||||||| || || | | ||||||||| Sbjct 4992 TCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCCCTCCTTGTCC 5051 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | |||| || | | ||||| || | |||||||| Sbjct 5052 TGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGAGTGATGGTC 5111 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| |||||||| || |||||||| Sbjct 5112 TTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 5143 >seq14285 Length=18903 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || ||||| | ||||||||||| | ||| || ||||| || |||||||| Sbjct 210 GAAGCCTCCTCGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTC 151 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 ||||| |||| | || |||| |||||| || ||||| || || |||||||| || Sbjct 150 TGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGG 91 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | || ||||| || ||||| ||| | | | || | || | | || Sbjct 90 AGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTC 31 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAG 34368 || |||| ||||||||| || ||||| || Sbjct 30 CACCTCCAGCGTGATGGTCTTTCCGGTCAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323015273301920