Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq13424 107 2e-18 seq8295 100 2e-16 seq14285 87.8 1e-12 seq633 87.8 1e-12 >seq13424 Length=49246 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 197 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 138 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| || || || || | |||||||||||| Sbjct 137 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 78 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| ||| ||||||| || || |||||| Sbjct 77 ATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTG 18 Query 45308 CCCGTCAGAGTCTTCAC 45324 || |||||||||||||| Sbjct 17 CCAGTCAGAGTCTTCAC 1 >seq8295 Length=14778 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||||| ||||||||||| ||| ||| | || ||| Sbjct 4935 ACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCTTCC 4994 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| |||||||| |||| ||||| || || ||||| | |||||||||||| Sbjct 4995 AGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGG 5054 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| | ||| ||||| | || || |||||| Sbjct 5055 ATCTTGGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGAGTGATGGTCTTG 5114 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || ||||| || || |||||| Sbjct 5115 CCGGTGAGTGTTTTCACGAAAATCTGCATG 5144 >seq14285 Length=18903 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| || |||||||| ||| || | || ||| Sbjct 188 ACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCC 129 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| ||||| || || ||||| | || ||||| ||| | Sbjct 128 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTGA 69 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||||| ||||||||||| || || ||||| Sbjct 68 ATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTT 9 Query 45308 CCCGTCAG 45315 || ||||| Sbjct 8 CCGGTCAG 1 >seq633 Length=15238 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || ||||||||||| |||| ||||| || || ||||| | || ||||| Sbjct 4 TCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCCTTA 63 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| ||| || ||| || | | | | ||||| ||||||||||| || || Sbjct 64 TCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATG 123 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || ||||||||||| || || || |||||| Sbjct 124 GTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCATG 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395005830597547