Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8951 320 1e-82 seq8295 109 5e-19 seq6044 96.9 3e-15 seq5453 96.9 3e-15 seq633 93.3 4e-14 seq13424 91.5 1e-13 >seq8951 Length=23152 Score = 320 bits (354), Expect = 1e-82 Identities = 498/705 (71%), Gaps = 10/705 (1%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| ||||| || || ||||| || ||||| || ||||| || ||||| ||| |||| Sbjct 2979 AGGCGGAAGCTTCCTTCTGGACAGTGGAAGAGGTGGACCTATCGAAGGACATGAAAGATT 2920 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 |||| || ||||| ||| | | || || ||||| | || || ||||||| Sbjct 2919 GGGAATCGCTCAAGTCGAGCGAGCGTCACTTCATCTCGCACGTACTTGCCTTCTTCGCCG 2860 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 | || || ||||| || ||||||||| |||| || | || || || ||||| |||| Sbjct 2859 CCTCGGACGGTATCGTAAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGGTGA 2800 Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 ||||||| | ||||| ||||| ||||| | || || || ||||||||| ||||||| Sbjct 2799 CGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCATAGCGAAATGT 2740 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGAC---AACGA-CGAGAAACGTAGACTGTTC 57884 | ||||| || ||||| |||||| | ||| || || || || ||| |||||| Sbjct 2739 ACTCGCTGCTGATCGACACGTACATACGCGACCCGAAGGAGCGGGA---GTAT-CTGTTC 2684 Query 57885 AACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGAT 57943 |||||||||||||| |||| ||| | |||||||| || ||| | | || ||||| Sbjct 2683 AACGCGATCGAAACGCTGCCGTGCG-TAAAGAAGAAGGCCGACTGGGCGCTGAACTGGAT 2625 Query 57944 AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTAT 58003 ||| | ||||| || | || | | | |||||||| || || || || || Sbjct 2624 CTCCAGCAAGAAGGCCAACTTTGGGGAACGTGTGGTTGCGTTCGCTGCTGTTGAGGGCAT 2565 Query 58004 ATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGG 58063 ||||| |||||||||||||| || || ||| ||||||| |||||||| ||||| || Sbjct 2564 CTTCTTCAGTGGCAGCTTTGCGGCTATTTTCTGGCTGAAGAAGCGCGGCCTAATGCCAGG 2505 Query 58064 CCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 |||||||| |||||| |||| |||||||||||||| || || ||| ||||| || Sbjct 2504 GCTGACGTTCTCGAACGAGCTGATCTCGCGCGACGAGGGACTGCACTGTGACTTTGCCTG 2445 Query 58124 CCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCAC 58183 ||| |||| | | | || | || ||| || ||| ||| | ||| || || Sbjct 2444 CCTGATGTTCCGGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTAACGGAGATCATTCG 2385 Query 58184 CGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGG 58243 ||| ||||||| ||||||| | || || | ||| | || || || || | ||||||||| Sbjct 2384 CGATGCGGTCGTGATCGAACAGGAATTCCTGACCAAGGCACTGCCAGTCGACATGCTCGG 2325 Query 58244 TATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 |||||| || ||||||| ||||||||||||| || || || Sbjct 2324 CATGAACTGCGAACTGATGTCGCAGTACATTGAGTTCGTGGCGGA 2280 >seq8295 Length=14778 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| |||||||| || || || || ||||| || ||||| | || || || || Sbjct 5147 AACCATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACTCTTGAGGTCGAGCC 5088 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||||| || || | || ||||||||| || | || || || Sbjct 5087 TTCGGACACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGA 5028 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||||| || ||||| ||||||||| ||||||| ||| || || || Sbjct 5027 TCAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCCGCACTCTGTCGGACTA 4968 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| || ||||| ||||| || |||| | || |||| Sbjct 4967 CAACATCCAGAAGGAATCCACCCTTCACCTGGTGCTCCGACTCCGTGGTGGTA 4915 >seq6044 Length=6192 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || || || ||| | || || || || Sbjct 4272 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 4331 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | || || || || ||||||||| || | ||||| || Sbjct 4332 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGAT 4391 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| |||| || || || |||||| Sbjct 4392 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGATTAC 4451 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || ||||| ||||||||||| ||| | ||| | || ||| Sbjct 4452 AATATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGT 4502 >seq5453 Length=57727 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| ||||| || ||||| | || || || ||||| Sbjct 57537 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 57596 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||||||||| || | ||||| || ||| Sbjct 57597 GATACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 57656 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || ||||| ||||| ||| |||| ||| Sbjct 57657 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGAC 57692 >seq633 Length=15238 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| |||||||| ||||||||||| || || || ||||| | || || || || Sbjct 162 AAGCATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACCATCACGCTGGAGGTGGAGCC 103 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || || | || ||| ||||||||| | || || || Sbjct 102 ATCGGACACCATCGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGA 43 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||||| || ||||| || || ||| ||||||| Sbjct 42 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGA 4 Score = 82.4 bits (90), Expect = 7e-11 Identities = 167/244 (68%), Gaps = 12/244 (5%) Strand=Plus/Minus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||| ||| |||||| ||||| || || || || || || |||||||| ||| |||| || Sbjct 2801 GAAGCAATCATGCAGATTTTTGTGAAAACCCTCACCGGGAAAACGATAACCCTCGATGTC 2742 Query 31244 GAACCGTCCGACA--GTG-TCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTG 31300 |||| | | ||| | || | ||||| | ||||| ||| ||||| | Sbjct 2741 ATCGCGTCGCAAACGGTGCTAGATA---TCAAAAGCAAAATAGAGGAACGCGAAGGAATT 2685 Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTG---GAAGACTCTATGACT 31357 |||||||||| |||||| | || || |||||||| ||| || || ||| || | Sbjct 2684 GCGCCCGACCAACAGCGTATCATCTTTGCTGGCAAGCAGCTGAACGATGACCGAAT---T 2628 Query 31358 ATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGC 31417 || ||||||||||| || | | |||||| | |||||||| || || ||| ||| Sbjct 2627 ATCTCTGATTATAACATCCAGCATGGATCGACGATGCATCTGGTGCTGCGATTGAAGGGA 2568 Query 31418 GGTA 31421 |||| Sbjct 2567 GGTA 2564 >seq13424 Length=49246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || ||||||||||| ||||| || ||||| | || || || ||||| || | |||| Sbjct 1 GTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCGGATACGATCGAG 60 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| | || ||||||||| || | ||||| || ||||||||||| || Sbjct 61 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATC 120 Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAA 31384 ||||| ||||| ||| |||| ||| ||| || ||| || ||||| || || || Sbjct 121 TTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAG 180 Query 31385 TCGAC 31389 ||||| Sbjct 181 TCGAC 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445686123043440