Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8951 232 1e-55 seq1721 208 1e-48 seq1524 134 2e-26 >seq8951 Length=23152 Score = 232 bits (256), Expect = 1e-55 Identities = 487/720 (68%), Gaps = 22/720 (3%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || ||||| ||||| || |||||||| || || || |||||| || | |||| Sbjct 2979 AGGCGGAAGCTTCCTTCTGGACAGTGGAAGAGGTGGACCTATCGAAGGACATGAAAGATT 2920 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 |||| ||| | | | | | ||||| | || || |||||| | | |||||||| | Sbjct 2919 GGGAA--TCGCTCAAGTCGAGC-GAGCGTCACTTCATCTCGCACGTACTTGCCTTCTTCG 2863 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 ||| ||| || || ||||| ||||| |||||| || || ||| || ||| || Sbjct 2862 CCGCCTCGGACGGTATCGTAAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGG 2803 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | | |||| ||||| ||||| || || || ||| ||||||||||| |||| Sbjct 2802 TGACGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCATAGCGAAA 2743 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA---CGTAAACACATGCTCT 125334 ||||||| ||||| |||| |||||| ||||| ||| | || | | || || Sbjct 2742 TGTACTCGCTGCTGATCGACACGTACATACGCGACCCGAAGGAGCGGGAGTATCTGTTC- 2684 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGA 125394 ||||| ||||| ||| |||||| || || ||||| | |||| | | |||| Sbjct 2683 --AACGCGATCGAAACGCTGCCGTGCGTAAAGAAGAAGGCCGACTGGGCGCTGAACTGGA 2626 Query 125395 TCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCA 125454 || | | ||| | | | || | |||| || ||||| || || ||||||| Sbjct 2625 TCTCCAGCAAGAAGGCCAACTTTGGGGAACGTGTGGTTGCGTTCGCTGCTGTTGAGGGCA 2566 Query 125455 TCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCG 125514 ||||||| || || |||||||| || || ||||| ||||||||||| || ||||| | Sbjct 2565 TCTTCTTCAGTGGCAGCTTTGCGGCTATTTTCTGGCTGAAGAAGCGCGGCCTAATGCCAG 2506 Query 125515 GACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCA 125574 | |||||| | |||||| | || || || |||||||| || ||||||||||||||| Sbjct 2505 GGCTGACGTTCTCGAACGAGCTGATCTCGCGCGACGAGGGACTGCACTGTGACTTTGCCT 2446 Query 125575 TTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAG-ATCCAGCGATGAAAAG-GTCAT 125632 || |||| || |||||| |||||| | || ||| | | | || | Sbjct 2445 GCCTGATGTTCCG---GTATCTG--------GTGCAGAAGCCGTCGAAGGAGCGCGTAAC 2397 Query 125633 CAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT 125692 | || | |||||| || ||| ||||| || || || ||| | | || || || Sbjct 2396 GGAGATCATTCGCGATGCGGTCGTGATCGAACAGGAATTCCTGACCAAGGCACTGCCAGT 2337 Query 125693 CAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCG 125752 | |||| | |||||||||||| | || |||| ||||||| ||||| ||||| ||||| Sbjct 2336 CGACATGCTCGGCATGAACTGCGAACTGATGTCGCAGTACATTGAGTTCGTGGCGGATCG 2277 >seq1721 Length=24452 Score = 208 bits (230), Expect = 1e-48 Identities = 642/985 (65%), Gaps = 76/985 (8%) Strand=Plus/Minus Query 126640 CCCGACACTCGTACAATCTC--TCGAGCCAATTTCAGAGCACGATCAATGTAGTCTACGA 126697 |||||||| ||||||| |||| ||| ||| |||| || ||||||||||| | Sbjct 20559 CCCGACACGGCAGCAATCTCCTTCGA--CAAGCTCAACCCACGGTCGATGTAGTCTACCA 20502 Query 126698 TGCGTTCAATGTCACACTCTTTGACA---CCACGGGTCGTCACCGCAGGAGTACCGAGTC 126754 || || || ||| |||| ||||| ||||| | || || || ||||| | Sbjct 20501 CCCGCGACATATCCTTCTC---GACAAGCCCACGCGTCGTAAGTGCCGGCGTGCCGAGCC 20445 Query 126755 TGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGTTGCAAGCGA 126814 || ||| || | || ||| ||| || || || || |||||||||||||| |||| Sbjct 20444 GAATACCGGACGGGTTTAGTGCGGACTTATCGCCCGGGACCGTGTTTTTGTTGCAGGCGA 20385 Query 126815 TTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACACTGCGCAAAT 126874 | | | || |||||| ||| || | || || | | || || ||||| || Sbjct 20384 TCGAGATCTCCTCCAGGATGTACTCGGCGCGCGCCCCAGTAATACCGACCGGGCGCAGAT 20325 Query 126875 CCACTAGAATCAGATGCACATCGGTACCGCCAGTGGTGACGGTGTAGCCTCGTGAAACGA 126934 | || || | ||||||||| || |||||||| || | || | ||||||| | | Sbjct 20324 CGACCAGCACCAGATGCACGTCAGTACCGCCCGTCGCCACCGAGTAGCCTTTCTCGAGCA 20265 Query 126935 GTCCCTCTGCCAACA----ACTGTGCATTTCGCACCACTCGTCTTTGGTAGAGTGCA-AA 126989 | || || || ||| || | ||||| |||||||| | ||||| | || || Sbjct 20264 GACCATC-GC--ACAGTGCAC-GCGCATTGCGCACCACCTGCTCCTGGTAT-GCGCGGAA 20210 Query 126990 CTCTAGAGTGGTGGCCTGGTGCATTGCGGTGGCGATCGCTGCAATCGTGTGATTGTGCGG 127049 ||| |||| ||||||| |||| ||||| || | || || | ||||||||||| Sbjct 20209 TTCTGGAGTCTTGGCCTGCAGCATGCACGTGGCAATACCGGCGATGGCATGATTGTGCGG 20150 Query 127050 TCCACCTTGCAGGCCAGGAAACACGGC----------------------TCGT---TCAA 127084 |||||| ||||| || || || ||||| |||| ||| Sbjct 20149 TCCACCCTGCAGCCCGGGGAAGACGGCCTGATTGACGCGCGATTCCAGATCGTACATCAC 20090 Query 127085 TTTC-CT------GCTCTAGTGAT----------TTGCGGTAAAAGATGACTCCGGCTCG 127127 ||| || ||| | | | |||||| | || || || ||||| || Sbjct 20089 CTTCTCTCCGTTCGCTTTTACGCTGCGGACACCCTTGCGGAAGAAAATCACACCGGCGCG 20030 Query 127128 AGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACAATGTCACAATACTCAAAGGGGCC 127187 || || | ||| || ||||| || || ||| |||| | || ||||| || || Sbjct 20029 GGGCCCACGGAGCGTTTTGTGTGTCGTTGTGCTCACCACATCGGCGTACTCGAACGGTGA 19970 Query 127188 AGGAATGACTTTGCCCGCAATCAAGCCCGCAATGTGTGCAATATCGGCCATCAGCAAGGA 127247 || |||| | |||||| || || | |||||| || |||||||| | ||| | | Sbjct 19969 CGGGATGATACCGGCCGCAACCAGCCCGGAAATGTGAGCCATATCGGCGAACAGGTACGC 19910 Query 127248 GCCGG-CTGCATCGGCAATCTCTCGGAATCGTCTATAGTCCAAGCGCCGAGGATAGCAAC 127306 ||| ||| ||| | ||||| ||||| || | ||||| | || || | ||||| Sbjct 19909 CCCGTTCTGGTTCG-CGATCTCCCGGAAGCGCTTGTAGTCGAGGCAGCGCGAGTAGCACG 19851 Query 127307 TGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCTCGGCAAGTTTGGCAT 127366 | ||||||| ||||| | | | || ||||| || ||| |||| | | ||| | | Sbjct 19850 AGATGCCGGCGATGATCACCTTCGGCTTGAACAGGCGGGCCGTCTCCTCCATCTTGTCGT 19791 Query 127367 AGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTGATG 127426 |||||| || || ||| || |||||||||||||||||||| ||||| |||| || | Sbjct 19790 AGTCGATCAGCCCCGTCACCGGGTCCACCTTGTACGGCATGCTCTCGAAGAAGATGGAGG 19731 Query 127427 TAGCGGACA-------CGT-TGCG----GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCA 127474 | ||||| | ||| |||| ||| |||||||| || ||||| ||||| |||| Sbjct 19730 TGGCGGAGATTTTCTTCGTCTGCGTCATGAACCCGTGCGTAAGATGGCCACCGTCCGGCA 19671 Query 127475 GATCGAGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGTTGG 127534 |||| || |||||||| | |||||||||| | | | | || || ||||||||||| | Sbjct 19670 GATCCAGCCCCATGATGCGTCCGTGCGGTTCGATCAGTGCCGTATAGACGGCAAAGTTCG 19611 Query 127535 CCATCGAGCCCGAGTACGGTTGTAC 127559 || ||||| |||||||| || || Sbjct 19610 CCGGTGAGCCGGAGTACGGCTGCAC 19586 >seq1524 Length=13294 Score = 134 bits (148), Expect = 2e-26 Identities = 350/533 (66%), Gaps = 3/533 (1%) Strand=Plus/Minus Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856 |||| || || | ||||| || ||||||||||| || ||| ||| ||||| | |||| Sbjct 8555 CCGTCGAACCGTCGATGTTCCTGTACATGATGGCGTTTATGCTGACGTCGGTCGTGGAGC 8496 Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916 | ||||| | | | || |||||||||| || | || ||||| ||| || || || | Sbjct 8495 AAGCGTTCTTCCTCTATAAAGCGTGCACGGTGGATCACGGCTATCCGCACGACGTATGTC 8436 Query 49917 ACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTC 49976 ||||| |||||| | || || || || | |||||| ||| ||| || || | Sbjct 8435 TAAACATCGAGCAGTACCAGGATATTAAGAAGCAGGTCCAGGTGACGACGTCCACCTTCC 8376 Query 49977 ATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGAT 50036 | ||||||||| | |||| | |||||||| | | ||||| | || || || Sbjct 8375 ACCAGTGGAACAACATCGCCATGTACGTGGTGCCGATCGTGCTGGCCCTGTTTCTCGGCG 8316 Query 50037 CCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAACTCT 50096 | | ||| | || || | || || |||| | ||||| | || || || Sbjct 8315 CTTGGTCCGATCGCCGTGGGCGCAAACTTCCACTCATCCTCGGACTGCTCGGGAAGTTCG 8256 Query 50097 TTTTCTCGGCAATGCTAACCGTAAACA---GTCTCAAGAGCTGGCCCGTAGAGTATATAA 50153 | | ||||| ||| | || |||| || | | |||||||| ||||| || | Sbjct 8255 TCTACTCGGTGATGATCGTGGTGAACACGCGTATGCCGTCGTGGCCCGTGGAGTACATCA 8196 Query 50154 TCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAGCGT 50213 ||||||| ||| || |||| || | || ||||| || ||| | | || ||||| | | Sbjct 8195 TCTACACCGCAACCATTCCCAGCGTGCTGACCGGTGCGGATATTGCAATCTTCGCTTCCT 8136 Query 50214 GCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCATCT 50273 |||| || ||||| |||| | |||| || ||| | || || || || | || Sbjct 8135 GCTTCGCGTACATCTCCGACATCACGACGGTCGAGGAGCGTACACTGCGCATCACGATAC 8076 Query 50274 TGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTG 50326 |||| || ||||||||||||||||| | ||| || || |||| | |||| Sbjct 8075 TGGACGCGACGTACCTGAGCACGATGCCGATCGGGGTCGCACTCGGGAATGTG 8023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740925744501320