Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq14285 105 2e-17 seq14080 104 5e-17 seq633 100 7e-16 >seq14285 Length=18903 Score = 105 bits (116), Expect = 2e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| ||||| || || || | || ||||| || || ||||| Sbjct 176 GTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCG 117 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| || ||||| |||||||||||||| || || Sbjct 116 GCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTC 57 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 || || || | ||| || || || ||||| || || || ||||| || || || Sbjct 56 ACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAG 1 >seq14080 Length=20585 Score = 104 bits (114), Expect = 5e-17 Identities = 224/330 (68%), Gaps = 4/330 (1%) Strand=Plus/Plus Query 238558 AACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGG 238617 || |||| || | |||| | || |||||| ||| ||||| | |||||| | || | | Sbjct 7569 AAGAGCTGGAAACAGCCCACACCCACGATGACCTGTGGAACGCAGCCCAGCTGCAGCTAG 7628 Query 238618 TAAGACTAGGCAAA-ATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAA 238676 | | | |||| || ||||| | ||| | || ||||||||||| || || ||||| || Sbjct 7629 TGA-AGGAGGCCAAGATGCACGGGTTCCTGCGCATGTATTGGGCGAAGAAAATACTAGAG 7687 Query 238677 TGGACTAGATCTCCAAAGGAAGCTCTTAGATATAG-TATTTATCTGAACGATAAATACGA 238735 ||||| | | | || ||||||| ||| || | | || |||||||||||| ||| Sbjct 7688 TGGACGAAAACGCCCGAGGAAGCGCTT-GAAACGGCCATCTATCTGAACGATCGCTACAG 7746 Query 238736 ACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACA 238795 || || || ||||| || || ||||| || || |||||||| || || | || Sbjct 7747 TCTGGATGGGCGCGATCCGAATGGGTACGTCGGGTGCATGTGGTCCATTGCCGGCATCCA 7806 Query 238796 CGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGG 238855 ||| || |||| ||| | || ||||| ||| || | |||||||| || || || Sbjct 7807 TGATCAGGGATGGAAGGAGCGGGAAATTTTTGGCAAAATTCGGTACATGAACTACGACGG 7866 Query 238856 AACTAAGAAAAAATTTGATGTAAATGCTTT 238885 ||| ||| ||||| || || || || Sbjct 7867 CTGCAAGCGAAAGTTTGACGTGAACGCGTT 7896 >seq633 Length=15238 Score = 100 bits (110), Expect = 7e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || ||||| || || || || | ||| ||||| ||||| || ||||| Sbjct 1 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCC 60 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||||||||| || || || || || | ||| || || || ||||| || || Sbjct 61 TTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTG 120 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || || || |||||||| Sbjct 121 ATGGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151185863729156