Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3338 150 2e-31 >seq3338 Length=23718 Score = 150 bits (166), Expect = 2e-31 Identities = 236/336 (70%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| || || || ||||| |||||||| | ||||| || ||| ||| | |||||| Sbjct 20539 GCCTGTCGATCCAAATCCTCCTGCGCCACGATCCGTGTCCGTCAGTGACGGTAGCTCTTC 20598 Query 5563 CACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 || || || | || |||||||| | ||||| || || || ||| |||| || Sbjct 20599 CAAGTCCGGATAGGCTATCTTTTCGCAGATGAATTGCGCAATACGATCACCCTTCTTCAC 20658 Query 5623 CTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCG 5680 ||||||||| | | ||| |||||||||||| || || ||||| || |||||||| Sbjct 20659 CTCGAAATCCACTTCG--GAATGGTTGAACAGCACAACACCAACGTTTCCCCGGTAGTCC 20716 Query 5681 GCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGA 5740 |||| | ||||| || ||||| |||||||||| || |||||||| |||||||| || Sbjct 20717 TCGTCAACGACGCCTGCCCCCACATCGATGAAGTTTTTCACCGCCAGCCCGGAGCGTGGT 20776 Query 5741 GCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCGC 5800 || || || ||||| || || || || | ||| | ||| | ||| || | || | || Sbjct 20777 GCTACACGTCCGTAACAGCCTTCCGGTACCTGCACCTGGATGTCAGTCATTACGAGCTGC 20836 Query 5801 CGACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTG 5836 ||| | || || || || ||||| | |||||| Sbjct 20837 TTACCTCGGGCCGGCACCGTGTAGTCGTAGGCGCTG 20872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429978888763784