Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq13095 87.8 9e-13 seq3854 86.0 3e-12 seq578 86.0 3e-12 seq14160 84.2 1e-11 seq13096 82.4 4e-11 seq102 82.4 4e-11 >seq13095 Length=1290 Score = 87.8 bits (96), Expect = 9e-13 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 ||||||| | || |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 497 AATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACC 556 Query 11513 AACTGAGCTA 11522 | |||||||| Sbjct 557 AGCTGAGCTA 566 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 60 Query 11516 TGAGCTA 11522 ||||||| Sbjct 61 TGAGCTA 67 >seq3854 Length=55519 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 43245 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 43186 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||| | |||| Sbjct 43185 CTGAGCTATGGAGCCG 43170 >seq578 Length=5002 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | || | |||| | || |||||||||| |||||||||||||||||||||||| Sbjct 1548 AAAAGAACACAATGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 1607 Query 11504 GCTCTRACCAACTGAGCTA 11522 ||||| |||| |||||||| Sbjct 1608 GCTCTAACCAGCTGAGCTA 1626 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1963 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 2022 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 2023 CTGAGCTA 2030 >seq14160 Length=235054 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 18545 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 18486 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 18485 TGAGCTATGGAGCCG 18471 >seq13096 Length=23533 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11464 GAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAA 11523 || |||||||||| ||||||||||||||||||||||||||||| |||| |||||||| Sbjct 9 GAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAT 68 Query 11524 TGGGCCG 11530 | |||| Sbjct 69 GGAGCCG 75 >seq102 Length=13416 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 104 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 163 Query 11516 TGAGCTA 11522 ||||||| Sbjct 164 TGAGCTA 170 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261445285985932