Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq8295 113 4e-20 seq633 111 1e-19 seq13424 104 2e-17 seq5453 102 7e-17 seq14285 98.7 9e-16 seq6044 95.1 1e-14 >seq8295 Length=14778 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||| | ||||| ||| | || |||||||| || | ||| || || || |||| | Sbjct 4928 TCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 4987 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||||||||| ||| | ||||| | | |||||||| ||||| || || || || Sbjct 4988 ATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCCCTCCTT 5047 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || ||| ||||| | | ||||| |||| ||||| Sbjct 5048 GTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGAGTGAT 5107 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||| || || || || |||||||| || ||||||||| || Sbjct 5108 GGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGGTT 5147 >seq633 Length=15238 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| |||||| | ||||| | | |||||||||||||| || ||||| || Sbjct 3 ATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCCTT 62 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||| || ||||| ||| ||| ||||| | | || || || | |||||| Sbjct 63 ATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGAT 122 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012 ||| ||||| || ||||| || || || ||||||||||||| Sbjct 123 GGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCATGCTTA 163 >seq13424 Length=49246 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||| || || ||||| || | ||| || ||| || |||| |||||| Sbjct 197 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 138 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| | ||||| | | ||||||||||| || || || || ||||| | Sbjct 137 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 78 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| ||| || || | | ||||| || | |||||||| || Sbjct 77 ATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTG 18 Query 94979 CCAGTAAGAGTTTTCAC 94995 ||||| ||||| ||||| Sbjct 17 CCAGTCAGAGTCTTCAC 1 >seq5453 Length=57727 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| || ||| || |||| ||||||||||| || ||| | ||| Sbjct 57727 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 57668 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | ||||||||||| || || || || ||||| | || || ||||||||| Sbjct 57667 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 57608 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| || || | | ||||| || | |||||||| || ||||| ||||| ||||| Sbjct 57607 TCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACG 57548 Query 94997 AAGATCTGCATGCT 95010 ||||||||||| || Sbjct 57547 AAGATCTGCATTCT 57534 >seq14285 Length=18903 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 94762 TTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 ||| ||||| | |||| | ||||||| || || | ||||| ||| | ||| || |||| Sbjct 226 TTTATTAAATTATTTAGAAGCCTCCTCGCAGACGGAGCACCAGGTGGAGAGTGGACTCCT 167 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 | || | || || || || || | ||| |||||||| |||||| | ||||| | Sbjct 166 TCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCA 107 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | |||||||||||||| || ||||| || || | ||| || ||||| ||| ||| Sbjct 106 GACGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGA 47 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAG 94986 ||||| | | || || || | ||||||||| ||||| || || Sbjct 46 TGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAG 1 >seq6044 Length=6192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| || | || || ||||| || | || |||||| || ||| | |||||| Sbjct 4484 CACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGGGTGCGGCCATCCTC 4425 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | |||||||| || || ||||| || ||||| | Sbjct 4424 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTG 4365 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || ||| || || | | | ||||| |||| || ||||| || Sbjct 4364 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 4305 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || ||||||||||| Sbjct 4304 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 4275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448210468358520