Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6044 167 2e-36 seq13424 122 8e-23 seq8951 114 1e-20 seq8295 114 1e-20 seq5453 114 1e-20 >seq6044 Length=6192 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || ||||| | ||| | |||||||||||| || || ||||||||| | Sbjct 4501 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGAC 4442 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | ||||||||| ||||| ||| Sbjct 4441 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 4382 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | ||| | ||||| | || ||||| Sbjct 4381 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 4322 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| ||||| || || ||||| ||||| |||||||| Sbjct 4321 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 4275 >seq13424 Length=49246 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || || || || || | |||||||||||| || |||||||| ||| | Sbjct 215 CCACCGCGAAGCCGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 156 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||| || || ||| Sbjct 155 AGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 96 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | ||| | ||||| | | ||||| Sbjct 95 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACC 36 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | || | ||| || || || ||||| || || Sbjct 35 TCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCAC 1 >seq8951 Length=23152 Score = 114 bits (126), Expect = 1e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 46085 TGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGA 46144 |||||||||| ||||| ||||||||||| |||| |||||| ||||| | || | Sbjct 2667 TGCCGTGCGTAAAGAAGAAGGCCGACTGGGCGCTGAACTGGATCTCCAGCAAGAAGGCCA 2608 Query 46145 CTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTT 46204 || | || ||| |||| || || || ||| |||||| |||| || |||||| | Sbjct 2607 ACTTTGGGGAACGTGTGGTTGCGTTCGCTGCTGTTGAGGGCATCTTCTTCAGTGGCAGCT 2548 Query 46205 TTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACG 46264 |||| || || || | | || | ||| | ||||| || |||||||| |||| Sbjct 2547 TTGCGGCTATTTTCTGGCTGAAGAAGCGCGGCCTAATGCCAGGGCTGACGTTCTCGAACG 2488 Query 46265 AGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 ||||||| |||||||||||||| ||||| |||||||| || || Sbjct 2487 AGCTGATCTCGCGCGACGAGGGACTGCACTGTGACTTTGCCTGCCT 2442 >seq8295 Length=14778 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| | || | ||| || ||||| || |||||||| || | Sbjct 4917 CCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAC 4976 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||| ||||| ||| |||| | ||||||||| ||||||||| Sbjct 4977 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGG 5036 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | || | || || | | ||||| Sbjct 5037 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACC 5096 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || ||||| || ||||| ||||||||||||||| Sbjct 5097 TCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 5144 >seq5453 Length=57727 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||| || |||||||| ||| || ||||| |||||| ||||||||||| ||| || Sbjct 57727 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 57668 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | ||||||||| || || |||||||| || ||||| ||| || ||||| | | Sbjct 57667 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 57608 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | ||||| | | ||||| || | || | ||| || || || ||||| || ||| Sbjct 57607 TCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACG 57548 Query 131224 AAAATCTGCAT 131234 || |||||||| Sbjct 57547 AAGATCTGCAT 57537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471927796394880